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GT13314

CSHL Arabidopsis genetrap mutant lines

Original: GT13314

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13314

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14634429 [Map]; Strand: c
      • AT2G34700.1 - [+] show detail - Pollen Ole e 1 allergen and extensin family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13314 - 3-prime edge 
    TTCCGACCGT TCCCGACCGT TTTCTCCCTT CCATTGTTGA GCTTTGACGG 
    CACGGTGCAT GTCATCGTTG CAGTCGTGGG TCCAGGATTC GTAGGCCAAG 
    CCCGGCACGT GTGGAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14621689 [Map]; Strand: c
      • AT2G34680.1 - [+] show detail - Outer arm dynein light chain 1 protein
        Distance: 0; Region: exon21 (CDS)
    Flanking Genome Sequence: GT13314 - 5-prime edge 
    TCATTTCATT TCATGTATTC CTGTGAGGGA TGATGGGATT GTGGGTGAGC 
    CAAGAAGTTG CATGTCCCAG GAACGTGTTC GTCCAGGTAA TCAATGTCTT 
    GTTGTTTCCG TGCTATAACA TGATCTTGGA ATTTTCTGAT GCAATGTGAA 
    CTTGAACTAG TTCGGCCAAC TTTTAGAATG CGAGTTTGA

AT2G34680.1

Model type
Protein coding
Short Description
Outer arm dynein light chain 1 protein
Curator Summary
isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
Computational Description
AUXIN-INDUCED IN ROOT CULTURES 9 (AIR9); INVOLVED IN: response to auxin stimulus, lateral root morphogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G78230.1); Has 5746 Blast hits to 1796 proteins in 310 species: Archae - 0; Bacteria - 1053; Metazoa - 771; Fungi - 422; Plants - 290; Viruses - 42; Other Eukaryotes - 3168 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G34700.1

Model type
Protein coding
Short Description
Pollen Ole e 1 allergen and extensin family protein
Computational Description
Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 31 (TAIR:AT1G28290.1); Has 194 Blast hits to 194 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR