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GT13348

CSHL Arabidopsis genetrap mutant lines

Original: GT13348

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13348

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21068049 [Map]; Strand: w
      • AT5G51820.1 - [+] show detail - phosphoglucomutase
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT13348 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATGGCAG TCCTATGCTT 
    CCGAGCAACT CAATATCTCT TCCCCAGATC CTCCTCTCTC TTCTTCACTC 
    TTTTAACGGA CACTTTTCAC TGATCTATTC ACTCACTCAA ATCGCCGCCG 
    GAGCTAAATC AATCAACAAT GACGTCAACC TACACGAGAT TCGATACCGG 
    ATTTCTCTTT TCTAGGACCG CCGGCGCTAA GGATTCGCCG TTATTGCCGT 
    CTCCGTCGTT TACTTTATCT ACTTCCGGCA TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20369012 [Map]; Strand: c
      • AT5G50090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-ter...
        Distance: -839; Region: promoter
      • AT5G50090.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -839; Region: promoter
    Flanking Genome Sequence: GT13348 - 5-prime edge 
    CCTACTTTCT CCCTGGACCA ACCGTTCTCC ACAGTCCGCG ACACATGCTC 
    GATGCTTTGT CTTATGTACC TTACTTTTCC ATTTTCTATG AACGAGTGTG 
    TTGTTCTACT TTCTTTTCGT TTTTGATCTT TTCCCCCGAA AGGGAAAGTG 
    TTTCAAGATG GCTTCGTTTA TCACTCTTCT TTTCCTTCAC GTGTTTTGCT 
    ATATGAATCA AACTCCTTGC AAGATTACAA AAATGTACGT CTCTTCCCGT 
    TGTACGTACA CGATATAGTA ACATAAAAAC TTACAAGTTT AAGTTACAAA 
    AATGTACGTC TTTAGTCTAA GTTAAGTCAG TCAATGTTGA TATGTGTCAG 
    CCACAACATA TTGTATCACG TTACTAGCTA TGTTACTTTA ACCCAAAATA 
    AAAACAAACT TCTTTTTTCA AGCTAATTTT TACATTAGTA AGCTTTTGAA 
    AACTTTAACA TTCTTCAAAA ACTTTTGTGT TTACCTTATA CTGTTCTTC

AT5G50090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G50090.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51820.1

Model type
Protein coding
Short Description
phosphoglucomutase
Curator Summary
Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts.
Computational Description
phosphoglucomutase (PGM); FUNCTIONS IN: phosphoglucomutase activity; INVOLVED IN: response to cold, starch biosynthetic process, detection of gravity, carbohydrate metabolic process; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: Phosphoglucomutase/phosphomannomutase family protein (TAIR:AT1G70730.3); Has 12307 Blast hits to 12296 proteins in 2800 species: Archae - 231; Bacteria - 9586; Metazoa - 483; Fungi - 211; Plants - 168; Viruses - 0; Other Eukaryotes - 1628 (source: NCBI BLink).
Link
InterPro Scan - TAIR