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Mutant Lines
GT13349

GT13349

CSHL Arabidopsis genetrap mutant lines

Original: GT13349

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13349

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 5; Position: 26913484 [Map]; Strand: c
- AT5G67440.1 - [+] show detail - Phototropic-responsive NPH3 family protein
  Distance: 0; Region: exon4 (CDS)
- AT5G67440.2 - [+] show detail - Phototropic-responsive NPH3 family protein
  Distance: 0; Region: exon3 (CDS)

ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
CCTTCAAGAA CATGTCAATG GCACGATACA CACCATCGTG TGATTGTCTT 
GGGAAAGTTG AAACCTTTTC TGCAATTGTA ATGAACTTTG TAGTAGACAA 
ATTGGTTTCG ATTCTGGAGA TTTCAGCTAA GTATCCATCG ATTAACTTGG 
CGACATTTGC TTTTGAACTG TCGTTGATGT CGTCTGAACA GTCAAGCTCG 
TCTCTTTTCT CTGTTTGTGT AACAAACTCA TCGATTAAGG TTTCAACAAT 
GTCAATGTCA TAGACTGTTT CACCTCCCTC TGGAGCTCTG ATCAAGAGAT 
CACCCACATT TGCTTCCTCT AGCTTCTCTC CGATTCTTCT ACTTAACTCT 
TTCCTCTCTT CTCTCCCACA TTCGAAAGAA ACAGAGGATT TCAACAGCTT 
GATCAAGAAT CCACAAGAAA CACTCTGTTT CTCACTAGGC AACATCGAAA 
CCAATGTCTC CAACAAAGAT CTTTGTTCCA TCACATCTTC TTCATCATCA 
TTATCATCGT TTTGAATCAT GAAACCAGGG ATTCTCTTTG CTGCATATAC 
CTCAAGAGCT TCTCCGATAA CCTCAGGCAA AACACCGCCT TTTCGTCTAA 
TAGTCGAAAC CACTCTTTTA AATAAATCAA TGCTGAGCTC AGCGAGATCC 
TCGACCCACC AATCTC

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 26913428 [Map]; Strand: c
  - AT5G67440.1 - [+] show detail - Phototropic-responsive NPH3 family protein
    Distance: 0; Region: intron4 (CDS)
  - AT5G67440.2 - [+] show detail - Phototropic-responsive NPH3 family protein
    Distance: 0; Region: intron3 (CDS)
Flanking Genome Sequence: GT13349 - 5-prime edge
```
TTTCTCCCTG CTTGAAGGTA ATGTCCGCTC TCAAATGCAT CGGATTTATG 
TCATTCGAAA ATAAAGTTTT GATCTTTTGA TTATACAGCA ACATCCAGGA 
ATAACAAAGA GTGAGAAGAA ATCATCAAGC CGATTAATGG ATTGCCGGAA 
ATTATCGCCG GAGGCTTGTG CTCACGCCGT GCAAAACGAG AGGTTACCAT 
TACGAGTCGT TGTACAAATC CTCTTCATCT CACTCGACC
```

AT5G67440.1

Model type: Protein coding
Short Description: Phototropic-responsive NPH3 family protein
Curator Summary: A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.
Computational Description: NAKED PINS IN YUC MUTANTS 3 (NPY3); FUNCTIONS IN: signal transducer activity; INVOLVED IN: flower development, response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT4G37590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G67440.2

Model type: Protein coding
Short Description: Phototropic-responsive NPH3 family protein
Curator Summary: A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.
Computational Description: NAKED PINS IN YUC MUTANTS 3 (NPY3); FUNCTIONS IN: signal transducer activity; INVOLVED IN: flower development, response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT4G37590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR