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GT13352

CSHL Arabidopsis genetrap mutant lines

Original: GT13352

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13352

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21068062 [Map]; Strand: w
      • AT5G51820.1 - [+] show detail - phosphoglucomutase
        Distance: -5; Region: promoter
    Flanking Genome Sequence: GT13352 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC TACCGTTTTC ATCCCTATGG 
    CAGTCCTAGG CTTCCGAGCA ACTCAATATC TCTTCCCCAG ATCCTCCTCT 
    CTCTTCTTCA CTCTTTTAAC GGACACTTTT CACTGATCTA TTCACTCACT 
    CAAATCGCCG CCGGAGCTAA ATCAATCAAC AATGACGTCG ACCTACACGA 
    GATTCGATAC CGTATTTCTC TTTTCTAGGT TCGCCGGCGC TAAGTATTCG 
    CCGTTATTGC CGTCTCCGTC GTTTACTTTA TCTACTTCCG GCATTCATCT 
    CAGAACCAAA CCGAATTCTC GTTTTCACTC GATTATAGCA TCCTCCTCAT 
    CTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1975609 [Map]; Strand: c
      • AT4G04120.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT13352 - 5-prime edge 
    AATCTCATAT TTGTCCGCTG CAATGATATC TGCATCCTTA TCACTGTCCC 
    ATGCCTCTAG CCGTTCATCG GCTGGTTGTT CTCTTATAAC CTTCGGTAAT 
    CTATCGATGC AAATATACTT GTTTGATTGT GTCCCCATAG CTCTATCGTA 
    TCACTTGTGC AGATGGATCT CATGTTCAAC ACGTATGTAG CTTATCCCTA 
    CACTGAGAGA GCCTAGACCG TCAAGAGTAC TCTTTACTTT TACTTTCATG 
    TTCCAAGACG GGACTGGAAA TTA

AT4G04120.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.8e-19 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT5G51820.1

Model type
Protein coding
Short Description
phosphoglucomutase
Curator Summary
Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts.
Computational Description
phosphoglucomutase (PGM); FUNCTIONS IN: phosphoglucomutase activity; INVOLVED IN: response to cold, starch biosynthetic process, detection of gravity, carbohydrate metabolic process; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: Phosphoglucomutase/phosphomannomutase family protein (TAIR:AT1G70730.3); Has 12307 Blast hits to 12296 proteins in 2800 species: Archae - 231; Bacteria - 9586; Metazoa - 483; Fungi - 211; Plants - 168; Viruses - 0; Other Eukaryotes - 1628 (source: NCBI BLink).
Link
InterPro Scan - TAIR