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Mutant Lines
GT13363

GT13363

CSHL Arabidopsis genetrap mutant lines

Original: GT13363

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13363

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 2; Position: 1867307 [Map]; Strand: w
- AT2G05160.1 - [+] show detail - CCCH-type zinc fingerfamily protein with RNA-binding domain
  Distance: -5412; Region: intergenic
- AT2G05170.1 - [+] show detail - vacuolar protein sorting 11
  Distance: -2570; Region: intergenic

GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTCCCA 
TGGAGGAGGC TTCTATTGAT TTCATCTCAC TCGACCANAA NACATCCTTA 
TATAATGTTA AAGGTTAGTG AAATGAAAAC TACTCTGAGA CGTTGATTAA 
TGTTAGTTTA GATATCTGTT GTTATAAATT TAGATTTTGT AATACTGTTG 
TAGAATTTAT TTTTTGGCAG TCTTTTTAAT TGAGTTACCT AAATTAGTGA 
GTAGCCATCC ATTAACTTCT CTTATTGTTT GATAATATTT TAACTAGGCT 
ATTGATTATG TATATGAAAA CATTAACTGA CAATTCCACA ATATAAAGTT 
ATAAAAACAT TTTAACTTTT CGAAAACAAA GTTAAGGTAT TTTGTTTTTA 
TTGTTTGAGA CTTTATGGAA AAGAAAATGA AATTAACTGA TAGGCGATTC 
TAAACACTTC ATTTTTTTCT GTGGAAACTG ATATCAGCAA CTCCATTACT 
TGCTAAATGC ATGTTGTCAT ACT

5 prime edge [+] show sequence

Chromosome: 2; Position: 1867364 [Map]; Strand: w
- AT2G05160.1 - [+] show detail - CCCH-type zinc fingerfamily protein with RNA-binding domain
  Distance: -5469; Region: intergenic
- AT2G05170.1 - [+] show detail - vacuolar protein sorting 11
  Distance: -2513; Region: intergenic

TCCTACTTTC TCCCTGATGG GAATGTTACG CTGAGATTAT GCTTGGCTTG 
TATACATTTT ACATTTCCAA ACTCAAATTT TGTAAAATCA GTTAATATAC 
AATAAAAGAC GTCAAGCCTA TACCTTTCTC TCAAAATAAA ATGGGTAAAC 
AGTAGCTAAC ATGTTCTTAT CAAATAAACA AAGTGTTATT ATTAACATAT 
CAATAACTAT TAGAATTGCC CTAGGATTCT AAATAGCTTA GAAGATGACA 
CTGAAATCCC ATTCTTTAAA AGAATTTAAC TCTTAAATGA AGCACTACTG 
TAAAGATAAT CTGCTCATTA ACCTGTGACA TTTATATTTC TGGATAGCTC 
TATTGATAAG ATTTCTCTTC CCTCTTCATA GTATAGATGT TATTTGCAAA 
GGTTCATCAC CTTAAACAGA GAATTACTAC TTTGCTTTTA ACATACTAGG 
GCACAACTAT ATGGCACATT ACATATGATA TGCCTTAACT TAAAACTTCC 
TACCAGTAAG TAAATCTGAT ACAC

AT2G05160.1

Model type: Protein coding
Short Description: CCCH-type zinc fingerfamily protein with RNA-binding domain
Computational Description: CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G52980.1); Has 286 Blast hits to 218 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G05170.1

Model type: Protein coding
Short Description: vacuolar protein sorting 11
Curator Summary: Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis.
Computational Description: vacuolar protein sorting 11 (VPS11); FUNCTIONS IN: transporter activity, binding, zinc ion binding; INVOLVED IN: vacuole organization; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 11 (InterPro:IPR016528), Zinc finger, RING-type (InterPro:IPR001841), Armadillo-type fold (InterPro:IPR016024); Has 716 Blast hits to 615 proteins in 203 species: Archae - 0; Bacteria - 2; Metazoa - 251; Fungi - 269; Plants - 42; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Link: InterPro Scan - TAIR