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GT13427

CSHL Arabidopsis genetrap mutant lines

Original: GT13427

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13427

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15684027 [Map]; Strand: w
      • AT4G32500.1 - [+] show detail - K+ transporter 5
        Distance: 0; Region: intron9 (CDS)
    Flanking Genome Sequence: GT13427 - 3-prime edge
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AACAGGGATG AAAGTAGGAT GGGAAAATCC CGTACCCGAC CGGATCGTAT
    CGGTTTCGTT AGGGTTTGAG CCTCGTTTCA GCAACTGATG CAGCAGTAAA
    TCGTCTCCTC TGGCTGCTGC AAAACATAAG CTGAGAGGTA AATCCATTTT
    CCCCTGAGCC AACATGAGTT CTGTCTCAGC CAAAATGCCT TTCATCACTG
    GATCTGTTGA GTCTTTCAGA TGCTGCATTA GACCAAAACA TATCCCAGAT
    GAGAAAAAAT AGTCAAACCA GCTAAAATGT TGTAGTCACT ATGGATTTAT
    ACGGAAATAG CTTCGGACTA ACCTGAAGAA GATTATTCAT GATTATTGCC
    CCATCACCAA CGTTTGCCTG AACAAGATTT AAGAATGCTG TACGGTTCAG
    ACGAAGCAAT TGACTCAATC GTTTGGTTC
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15684009 [Map]; Strand: w
      • AT4G32500.1 - [+] show detail - K+ transporter 5
        Distance: 0; Region: intron9 (CDS)
    Flanking Genome Sequence: GT13427 - 3-prime edge
    TTTACCGACC GTTACTGACC GTTTTCATCC CTAACAGGGA TGAAAGTAGG 
    ATGGGAAAAT CCCGTACCCG ACCGGATCGT ATCGGTTACG TTAGGGCTTG
    AGCCTCGTTT CAGCAACTGA TGCAGCAGTA AATCGTCTCC TCTGGCTGCT
    GCAAAACATA AGCTGAGAGG TAAATCCATT TTCCCCTGAG CCAACATGAG
    TTCTGTCTCA GCCAAAATGC CTTTCATCAC TGGATCTGTT GAGTCTTTCA
    GATGCTGCAT TAGACCAAAA CATATCCCAG ATGAGAAAAA ATAGTCAAAC
    CAGCTAAAAT GTTGTAGTCA CTATGGATTT ATACGGAAAT AGCTTCGGAC
    TAACCTGAAG AAGATTATTC ATGATTATTG CCCCATCACC AACGTTTGCC
    TGAACAAGAT TTAAGAATGC TGTACGGTTC AGACGAAGCA ATTGACTCAA
    TCGTTTGGTT CGAACTGTGA ACAACTGTGG CCTGTAACAT AGAACCCCAA
    CTTCACCAAA AACATGGCCG GTCTGTGCTT CACCAACTAC CTGCAATGAA
    TACACAACTC ACAAC

AT4G32500.1

Model type
Protein coding
Short Description
K+ transporter 5
Curator Summary
Encodes AKT5, a member of the Shaker family potassium ion (K+) channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).
Computational Description
K+ transporter 5 (KT5); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding; INVOLVED IN: potassium ion transport, N-terminal protein myristoylation, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Shaker pollen inward K+ channel (TAIR:AT2G25600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR