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GT13430

CSHL Arabidopsis genetrap mutant lines

Original: GT13430

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT13430

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 84824 [Map]; Strand: w
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: intron1 (CDS)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -577; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -592; Region: promoter
    Flanking Genome Sequence: GT13430 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCACCA GGTATTTATT 
    ATTAGGAGAA ACTCCACTTT CTTGATTGAT TTTTATTATC ATCTCCACAC 
    TGCTTTGGGT TGTTGATATA GTTAGTTAGT TAGTTAGTGA TGAATTACAC 
    ACTGCTGCTG TGGCAGATTC ATCTGAAGAT AGATCAAGTT CGGTCTATGA 
    GTTTCTGTAT CCCCGTAAAG AGGAGCTCCC TGATGACAAA GAAATGACTA 
    TTTTCGACCA TCTCGAGGAG CTCCGGGAGA GAATATTCGT CTCTGTTTTG 
    GCTGTAGGAG CTGCAATCTT GGGATGCTTC GCCTTCTCCA AAGATCTTAT 
    TGTCTTTCTT GAAGCTCCCG TCAAAACTCA GGGTGTACGG TTTCTCCAGC 
    TTGCTCCTGG CGAATTTTTC TTCACAACTT TAAAGGTAAT GATCAGATTG 
    ACGACAGATA GCATCATATT CAAGATAGAT GATTTTCTTT TTCTTGTGTT 
    GCGGTGCAGG TCTCCGGTTA TTGCGGGCTT CTACTAGGGA GCCCAGTGAT 
    CCTGTATGAG ATTATAGCTT TTGTCCTTCC CGGTCTGACA CGGGCTGAGA 
    GAAGGTTTCT GGGGCCAATT GTATTTGGCT CCTCATTGCT CTTCTATGCT 
    GGACTTGCTT TCTCCTACTG GGTTTTAACC CCTGCAGCCT TGAATTTCTT 
    TGTGAATTAC GCTGAAGGTG TGGTAGAATC TCTGTGGTCT ATCGACCAGT 
    ACTTTGAGTT TGTACTAGTG CTTATGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 84890 [Map]; Strand: w
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: exon1 (CDS)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -511; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -526; Region: promoter
    Flanking Genome Sequence: GT13430 - 5-prime edge 
    TCCTACTTTC TCCCTGCCTG GTGGTCTGTC TTCTACAGCA GAGCCAACGC 
    CGGGGGTGGT CTCTGTTGGT GAATCGTCGT CATTGAGAGC TGACACCGGC 
    CCAAAGCCTT TGCTCCGGCG TTGCGTGACG GAGTATCGGA GTCCAGCTTC 
    CCTCCACGAA TTGCAGAAAG TTACAGCGTA AGGACAACGC TGCTTTGTAG 
    GCGAACCCAA GTTGCGAGTG GTGAGGCGGA AATGGTGGAT AAGAGCAGAA 
    CTAGTGCTTG TGCTGCTCAT CTCTCGAAGA ATCCTCTCTC GTATCGTATG 
    TTGTTGATTT TCAATTGCAA AGAGAGCTTC AGAGAAGGAA CGATTGGTTC 
    CGGTCGAGTT TCGTTGCCCA CATTTGATAT TTTCCAAAAC AACCCAATCC 
    TTTTTTTTTT CTCCGTAAAA CCTTCTTCCA TCACAAATTG GTTAACACAA 
    GGAAAACAAC GCCGTTTTTA GGAAAAAGCA AAGGAGCTTT ATGGGGCCTT 
    TTATGGCTTT ATAAGGCCCA TTACTACGGC CCATAAAGAA AGTTTATCCT 
    AGAAGGGAGG AGGGGGGTCC ACTTCACAGT TCACACAAAG GGCTCGCTGG 
    GTTGGCCAGT TTTCCCGCCA GCCCAAGGG

AT2G01110.1

Model type
Protein coding
Short Description
Sec-independent periplasmic protein translocase
Curator Summary
mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description
ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.1

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.2

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link
InterPro Scan - TAIR