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GT13439

CSHL Arabidopsis genetrap mutant lines

Original: GT13439

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13439

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11134852 [Map]; Strand: w
      • AT4G20780.1 - [+] show detail - calmodulin like 42
        Distance: -882; Region: promoter
      • AT4G20790.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13439 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAAATAC 
    CACCATTAAA GCAACCAAGC TTGACGCAGA TTTATGACTT GGTGAGTTCA 
    TTGTATGAGT CTAGTTCACG ACATCATTGA AATACCTTGT AAAGCTTTAT 
    TGGTTTCTTT TGATTTTCAG ACATCTGGTG TTAGATAGTA TTGTAAGGAT 
    TAAAGACATA TTTGTGTGTT TTTTCTTTGA TTACTATAAG TACTGAGAGA 
    ATTTGCAGAA AATGAGTACT TAATTTGCAG ACATGAAATC TGTAAATGGG 
    CTTCATTTCT GCCAACGAGC TTTATTAGCT GAAATGGGTT TCATAGTTTT 
    GTGGGTTCTC AAATAACCCG ACCCGGGTTG GAAGATATAG AAACTATACA 
    CTGGTTGGCA AATGGGAACG TTCGATTAAA AATTCGGTAA CTACTACGAC 
    GTGACTTGTC TCTTCTCCGT TGAAAAGCCA TCGACAGTTA TGTATGAGTG 
    TATCATTTAT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11134912 [Map]; Strand: w
      • AT4G20780.1 - [+] show detail - calmodulin like 42
        Distance: -942; Region: promoter
      • AT4G20790.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT13439 - 5-prime edge 
    CTTTCTCCCT GGTGGTATTA TATCAGTACA CATCAGTCCT AGCGTAATGG 
    CTTGCTTAAC TTGATCAAAT GTTCTCCCCT CAATCTTCAT CTTCTCATCA 
    ATCACTCTCT CTAGATTATC CGGATAATGA ACTCTTATAT ACTCAAGATA 
    CCTTCTTTCT GAATCTTCTT GTCCCAAATC AGGTCTTAGA TTTGTAATCA 
    TCTCCACAAA AAACAATCCA AAGTTGAATA TATCTGTAAT AACACAACAA 
    CAACAACAAC AACAACAGAC TTAGCTTTTA TAGCCTTAAA AAGGTTTTGA 
    TTTTTGCAAG AAGAAGATGA AGCCTTACTT GTTGACAAGT TGTTTCTATC 
    TCCAATCTTG AAATGAGAAA TCAAAGGTTC TTGATTATCA TCGGATAACA 
    AAACACTGCT TGTGGTGAGA TCAAATGTAA TCTCTGGCCA TTGATCTGAT 
    AGATAACAAA TACCTTCTAC AACTCCTAGA ACTACTCTTA ACCTTCTTCT 
    CCATGATAAA GCCATTGACG AACTTAACCA AGTCTCAACA TTTTCACCTT 
    GAATCCATTC TGTAACCAAA GCTCTCATGT TTCTACTATT ACACCAACCC 
    AACACTCTTA CCAAGTTCTT GTGTCGTAAC TTAAAAACCA TCTCGCATAC 
    CTCTGCGAAT TCACGCCTTT TCTCACTCGA AACCTTCTCT TTATAAACCT 
    C

AT4G20780.1

Model type
Protein coding
Short Description
calmodulin like 42
Curator Summary
Calcium sensor involved in trichome branching.
Computational Description
calmodulin like 42 (CML42); FUNCTIONS IN: calcium ion binding; INVOLVED IN: trichome branching; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 43 (TAIR:AT5G44460.1); Has 15351 Blast hits to 11255 proteins in 1265 species: Archae - 0; Bacteria - 33; Metazoa - 5903; Fungi - 3155; Plants - 4145; Viruses - 2; Other Eukaryotes - 2113 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20790.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G23950.1); Has 22866 Blast hits to 21354 proteins in 341 species: Archae - 0; Bacteria - 11; Metazoa - 712; Fungi - 3; Plants - 21851; Viruses - 23; Other Eukaryotes - 266 (source: NCBI BLink).
Link
InterPro Scan - TAIR