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Mutant Lines
GT13449

GT13449

CSHL Arabidopsis genetrap mutant lines

Original: GT13449

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13449

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 1553082 [Map]; Strand: w
- AT1G05310.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: -565; Region: promoter
- AT1G05320.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: -521; Region: promoter
- AT1G05320.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: -526; Region: promoter
- AT1G05320.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
  Distance: -526; Region: promoter

ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
TTCCAATAAT GAGGTTTATT GAATTATAGT TGTATAGACT CAGTAATAAC 
GAATCATTTC TAACTTACGT TTTTTTTTGC TGTATTTCTT TTTGCATAGG 
GAAACATTAT AACAACAAAA CATCAGAGCT GAACAGATTT TGTTTGATAA 
ATGATTAGTA TGGCATTCTA TAAAATTGCT TTAAGTAGAT GACTATTTTT 
TTTCCCTAAA TTTTTGGTTG CACATTATAC ATATAGCTAG CATAATCACT 
TTATTAGTTA GAAACATGAA AAATGATATA TCATTTATCA CCTTCTTTGT 
TTACATGTGA GATAAAGTAC TCAGAGTATA TATATTGACA AGGGGTTCTC 
AAATATATTA TACAAACGAA ATTGATATTC ACTTTTTTTT TATTCTAGAA 
AAGGCTATGA GCCTTTTTGG TAGGGGGATC GAGATAGTTT AATATTTGTA 
AAAAAGCAAA CTTTAGCAAA GGGTAATTTG CAGGGAATTC CAACAAATCC 
TTACACTTCA GGCAATTCCA AA

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 1553138 [Map]; Strand: w
  - AT1G05310.1 - [+] show detail - Pectin lyase-like superfamily protein
    Distance: -621; Region: promoter
  - AT1G05320.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: -465; Region: promoter
  - AT1G05320.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: -470; Region: promoter
  - AT1G05320.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
    Distance: -470; Region: promoter
Flanking Genome Sequence: GT13449 - 5-prime edge
```
CTTTCTCCCT GATTTGGAAG TTGAGTACTA CACATTTAAC TTTGTTGATT 
GATTATCTGA CTATATATAT ACCGTCCAGT GTCCACAGCC TTATGATAAC 
TAAGATAAAT AGAAATGAAG CATCTAACAT CCCATGTGAA AATAAATCTT 
GTGTGAAATT TTATCTCGCA TACACTTTCA CCATATAAGA TTGTAAGCTA 
ATGAATATAA GAAGTGAAAT TAAAGGTCCC AATATTTGCA AGTATATATT 
GTGTTTTTAT CGTTTCACTA GTTATGTAGT TTCTTTTTGA TACCCCGATC 
CAAATTTTGT AATTACGTAG AACCATTATG GTCTATTTAT TAGTCTATTG 
ATTGTCTTAG TCAATAACGC ATATGTATCA CCGAATATGG ATCATTAATT 
ACTGAATAAA ACACCCAAAA AACTTGTTAG CAAATGAACC CTATGAATAA 
AAGAAGGGGC ATAATGGAAA TTTAGATAAC TATCCTTCAA TGATATACAA 
AGAGACCCAC TCCCTCTCCA CATTTTCTTT TTCAAATAAA AAGACTCTCT 
CTCTCTCCCA T
```

AT1G05310.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 4576 Blast hits to 3466 proteins in 439 species: Archae - 11; Bacteria - 724; Metazoa - 994; Fungi - 355; Plants - 1773; Viruses - 6; Other Eukaryotes - 713 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G05320.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, egg cell; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706; Bacteria - 62589; Metazoa - 106546; Fungi - 19914; Plants - 13918; Viruses - 1287; Other Eukaryotes - 59690 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G05320.2

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, egg cell; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706; Bacteria - 62589; Metazoa - 106546; Fungi - 19914; Plants - 13918; Viruses - 1287; Other Eukaryotes - 59690 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G05320.3

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, egg cell; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 267444 Blast hits to 119656 proteins in 3886 species: Archae - 3699; Bacteria - 62432; Metazoa - 106542; Fungi - 19875; Plants - 13918; Viruses - 1288; Other Eukaryotes - 59690 (source: NCBI BLink).
Link: InterPro Scan - TAIR