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GT13479

CSHL Arabidopsis genetrap mutant lines

Original: GT13479

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13479

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8519926 [Map]; Strand: c
      • AT1G24070.1 - [+] show detail - cellulose synthase-like A10
        Distance: -192; Region: promoter
      • AT1G24090.1 - [+] show detail - RNase H family protein
        Distance: -908; Region: promoter
    Flanking Genome Sequence: GT13479 - 5-prime edge 
    TCCTACTTTC TCCCTGGGTT TAAAGTTGTG ATATACTGCT CGTGAGTCAT 
    CAGCATCTTC TCCAAACAAT CAGCAACGTA CACTACACTA TTAACGACAA 
    GTCGAGAACC AACCAAACTA AAGAAAACCA ACAAAAGGTC TCAACTAAAA 
    AAAACAAAAA AAAATTAAAA TTAAATTCAT TGGGTTAGTT TAAAAATGCA 
    AATGCCCCTT TCAATCAAAG TCTCTTTTGA AGTTAGTCCC TGATGAGTTT 
    AAACTAGACA AAAAAAAAAT GACTACTTTT TTAAAGTCCC TCTTTTTTTT 
    ACAAAAT

AT1G24070.1

Model type
Protein coding
Short Description
cellulose synthase-like A10
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like A10 (CSLA10); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT4G13410.1); Has 5025 Blast hits to 5019 proteins in 1468 species: Archae - 208; Bacteria - 3931; Metazoa - 29; Fungi - 85; Plants - 483; Viruses - 11; Other Eukaryotes - 278 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G24090.1

Model type
Protein coding
Short Description
RNase H family protein
Computational Description
RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT5G51080.2); Has 3412 Blast hits to 3412 proteins in 738 species: Archae - 71; Bacteria - 1533; Metazoa - 7; Fungi - 2; Plants - 1270; Viruses - 0; Other Eukaryotes - 529 (source: NCBI BLink).
Link
InterPro Scan - TAIR