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GT13504

CSHL Arabidopsis genetrap mutant lines

Original: GT13504

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13504

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24608051 [Map]; Strand: c
      • AT5G61150.1 - [+] show detail - leo1-like family protein
        Distance: -326; Region: promoter
      • AT5G61150.2 - [+] show detail - leo1-like family protein
        Distance: -326; Region: promoter
      • AT5G61160.1 - [+] show detail - anthocyanin 5-aromatic acyltransferase 1
        Distance: -673; Region: promoter
    Flanking Genome Sequence: GT13504 - 5-prime edge 
    TCTTTGTCTC TTGTTAATTT CTAAAGCAGA TAAAATCTAT AAACCAACAA 
    CAATGTTTTA GAAGAAGACA TAACATTTAT TTTGGCAACT CAAGTTATTT 
    GATCAAAGAA GTTAATAATT AGTTTTTAAA ATAAATTAAA TATAAAAAAA 
    TAGGGGCCAA AAGAATCAGT TAAAAGGATG TTGTATCATT CATATACGTA 
    GGGGCCAAGG CAAACACAAG CTCACTATCA CAAAGAAACT GGTATCCATA 
    ACCCAAAATT TGTGGGCCAA AAATATTGAA TTCCAATCTC AAAAAAGCCC 
    ATAAAATCCC ATCTTTTTTC CCTCTCTAGT CGTCGTTACA CGTAAAAAAA 
    ATGATTTTTA ATAATCCGGT AATGCGTTAA AAAAGATATA TCGATGAAAA 
    TTTCCTTTTC TTTGTAAGTT GTAACAATTG TTTTTAATAA TAATAATTCT 
    GATGCCATAA AATCGCGAGG TAGAGATGAA AAAAAAATAG CTTCTTCAAC 
    AAAGGCCGAT AACAGTGAAC CCTTCGTCGG AGCTCAGATC ACGAGCCGCC 
    GTCACCAGCT AAGAGGCAGT GACTTTTGAG TAAGTGAGGC GAAGATGGTT 
    AAAGGAGAAA AGAGATCCGA GATGATGCTT AATCTGTTCG GAGATAATTC 
    CGAGGAAGAA GAGATCGAAT CCGAACATGA ATCCAATCGT CGTCAGCCTA 
    ACTACGCTTC CGTAACTCTC TCCATCTTTA TCTCCTTCGT TTCG

AT5G61150.1

Model type
Protein coding
Short Description
leo1-like family protein
Curator Summary
Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold.
Computational Description
VERNALIZATION INDEPENDENCE 4 (VIP4); INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 65962 Blast hits to 30671 proteins in 1602 species: Archae - 182; Bacteria - 8432; Metazoa - 26538; Fungi - 7901; Plants - 3149; Viruses - 848; Other Eukaryotes - 18912 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61150.2

Model type
Protein coding
Short Description
leo1-like family protein
Curator Summary
Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold.
Computational Description
VERNALIZATION INDEPENDENCE 4 (VIP4); INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 69096 Blast hits to 31991 proteins in 1682 species: Archae - 184; Bacteria - 8816; Metazoa - 27909; Fungi - 8257; Plants - 3470; Viruses - 882; Other Eukaryotes - 19578 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61160.1

Model type
Protein coding
Short Description
anthocyanin 5-aromatic acyltransferase 1
Computational Description
anthocyanin 5-aromatic acyltransferase 1 (AACT1); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G29680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR