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GT13510

CSHL Arabidopsis genetrap mutant lines

Original: GT13510

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13510

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 214122 [Map]; Strand: c
      • AT2G01470.1 - [+] show detail - SEC12P-like 2 protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT13510 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATATACAC 
    TCATATAAGA ACAGAATATA AAACCTTTCC TACTTACAGG TTGTTCCGAG 
    AGAGAATTGG TGTTTAGATC AACACGGCAT ATTAATATGA CATTAGAGAT 
    TCCACTTCGT CCCTCTCCGC CTCCGCCGGA CAAAACGATG CAGCTCCGGG 
    AAGAAGAAGA AGAAGAAGAC GACTCATCAT CATCTTCAGA TTTCTCCGGA 
    TCCATTATGA TTTTGGATCT GACATCTACC TCCGGAATCC AGTCGGCGGC 
    GTAAATCGGT ACACCGTAAG TCTGCATATT CGACGGTTGA TTCGTCTCTG 
    TACTCTGATT CGCCATCCTC CGTGTCTGTC TCTCGAGCTC AATGCCAAGT 
    CCCCACTGAT TCGTAAAAAT ACTAAATACA AAAAAAAATA TTAATGGGCT 
    AACTTAAGGC CCATTACAGT ATTTATAGGC CCATCATAAT ATTTCATTTA 
    TCGCTGAATT CCGGTAAAGT GATAGCGGTT GGACCCGGTT CACGGGATAG 
    AGACGGGAAA GAGTACGGCG GTACGGAGGT CAAACTCGGC GAGAAAGAGT 
    ACGTATACCG GATCCTTTAA TTTTTATAAT ATTTTCATTT ATCACCCCAA 
    TACTATTGAT TTGATCTAAA AACACCCTAT AGTTGTGTAA AATTCTTAAA 
    TCGATGTGTT GGTGATTTTT GACGTAGGTA TCATCTGTTT CGGGACGAGG 
    ACATCCTTGG TACATTGCAC GAGTAAAATG CAAAGGAAGT CTCTGAGTCA 
    GCTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 214064 [Map]; Strand: c
      • AT2G01470.1 - [+] show detail - SEC12P-like 2 protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT13510 - 5-prime edge 
    CCTACTTTAT CCCTGAGTGT ATAGGAGCAG ATCTTATGCA TTTGCAAGGT 
    TTTGTATTTC CTATAACTAG ATCGGATACT TATTTTCAGC TGGGTAGGCT 
    TGTGGTTGGC TCTGATCTGC CTTATCGGAT GGCTGTTCAT CCTCGGGAAG 
    GTGGTCTTAT TTGCGCGTTG CCTAACAGTT GCAAGTGAGT AATTCTCAAT 
    TCGATTTCAA ATGAAAGCAT ATGATCTTGA AGTTTCTGTA TACAAAGTCG 
    TAGTGCATGA GATTTTAGAG AGAAGTTCTG TGAGTTTATG GTTTGGAGTA 
    GAGAGAAATT TACAAGAGAT GTGGTAATAA GTGATGTTCT CTTGATACAC 
    AGACTGTTTC ATTGGGAAGA CATTATGAGC CGAGAGGATA ATCAGGCTGG 
    TGAGTCGGAG GAAGTGATTA AAGAGTTAAG AGATGTTGGA CAACAGTTGG 
    CTCTGGCGTT TAATCCGGAG GGGTCTGTTC TTGCTGCTGG TGCGGAGGTA 
    AAAAAAGGAT CTTTGATGCA ATCTCTTTTT AATAACAGAG ACATAAAACG 
    TTTAGTGGTT CTTATGCATT TTGTTTTGAT GCAGTATAGG ATGGGACTTT 
    GAGGGTTTTT AAATGGCCTA GCATGAATAC TTTACTTAAT GAGTCCCAGG 
    CTCATTCTTC AGTTAAATGC CTTACTTTCA GGTTTGCTTT CTCTTATCAA 
    TAAGGGAAAT ACTTGCTATC CGAAAAGTGG TTCATTCTCT TGGATGACAA 
    AGGAAT

AT2G01470.1

Model type
Protein coding
Short Description
SEC12P-like 2 protein
Curator Summary
Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER.
Computational Description
SEC12P-like 2 protein (STL2P); FUNCTIONS IN: nucleotide binding; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G50550.1); Has 6374 Blast hits to 3814 proteins in 364 species: Archae - 22; Bacteria - 2789; Metazoa - 1016; Fungi - 1422; Plants - 400; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link
InterPro Scan - TAIR