1. Home
  2. Mutant Lines
  3. GT13521

GT13521

CSHL Arabidopsis genetrap mutant lines

Original: GT13521

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13521

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19670622 [Map]; Strand: c
      • AT2G48090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -858; Region: promoter
      • AT2G48100.1 - [+] show detail - Exonuclease family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G48100.4 - [+] show detail - Exonuclease family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G48100.3 - [+] show detail - Exonuclease family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G48100.2 - [+] show detail - Exonuclease family protein
        Distance: -63; Region: promoter
    Flanking Genome Sequence: GT13521 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATC 
    CAAAACAGCT ATAAAGATAA ACTTCCAGAG CTTGGTGAAG GAGCAGCAAC
    CCTAGTTTTC AATTCCTAAA GGTGAAGTTT TTGTTCTTCT TTTTCTTTGA
    TTCTACTCTT TTTTCGTCAC AATAGCGCAG TAGCGATCTG GGTTGGCGTT
    TTTATTGACG GATTTTGGTG GGTTTGGGTT CGTGTTAGAT TTTACTTTCA
    CAGATTCAGG TATGTATTTG ATCTTATTTA GCTTTGGTAA TACTCAAACC
    AACTAGTATT TGATCTTAAT TAGGTGACGT TGATATTTTG TGTGTTGTGG
    GTCAATCATC CACTCTAGGT TGATCTGCGT CTATGTTTAG TCCTAATTTT
    GAAGAATCAT TCTAATTGCT GATGTTTATT TATGACAATT TTATGTCTTA
    CTTCGAATTT AGCTAAGATA ATAAATCTAG ACGAGTGCCT TTATAAACAG
    TTTATGTATG AACAATGCTT CGCTTGTGGG ATTGTTGATT TCACTACATT
    TGATTAAGAA TGTACATACT ATTACAAATG TTATCGATTA AAAACGTCAT
    TTTCAGATAT TAGTTCTCCA GCGAGTTGAC ACAAAACCCG ATTACGTTTC
    ATCCGGCGAC TCGCTTTGAT ATTCCATGGA TTCTCAGTTG AATCCTTCCA
    AGAGACGCAA GATAAGGTTC GCGTCTCTCA TCTTTTCCCC AGTTTTTTTT
    CTTATTCGAA TCACTTAAGG CTTG

AT2G48090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, root, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48100.1

Model type
Protein coding
Short Description
Exonuclease family protein
Computational Description
Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1569 Blast hits to 1569 proteins in 234 species: Archae - 0; Bacteria - 15; Metazoa - 734; Fungi - 438; Plants - 246; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48100.2

Model type
Protein coding
Short Description
Exonuclease family protein
Computational Description
Exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48100.3

Model type
Protein coding
Short Description
Exonuclease family protein
Computational Description
Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48100.4

Model type
Protein coding
Short Description
Exonuclease family protein
Computational Description
Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT3G27970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR