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GT13554

CSHL Arabidopsis genetrap mutant lines

Original: GT13554

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13554

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1996202 [Map]; Strand: w
      • AT4G04145.1 - [+] show detail - transposable element gene
        Distance: 2308; Region: intergenic
      • AT4G04150.1 - [+] show detail - transposable element gene
        Distance: -1360; Region: intergenic
    Flanking Genome Sequence: GT13554 - 3-prime edge
    ACTTGTTATT CAAATCTGTG ATTAATACCC ATTTACCAAA AAAAAGCCTT 
    GATGATTTTT TACCAATTCA ATTTAACAGA CACAGACGCA CAAATCTTCA
    AAAGCGATAC TACANACAAT TTATAGTATC ATAAAACTAA AATCGCTTCT
    AGGGATGTCA CCTGATAGAA CCCGATTCAG TTCTATCAAG AAAGTAACAT
    AAATTAGGTG AGAAGTAGAA GAAAGAGATG AAAAATCAGA AGAAATTGAG
    GAAGAAGATG ATTGTCGATT TTTTAATTGA TCTTTCGACC ACCTTTCTCG
    TAAGCGAAAG AGTACTAAAT CCAGAAATTA AAAGGCTTAA GATGCTAATA
    CAATAGCAGC CCAATAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1998254 [Map]; Strand: w
      • AT4G04150.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT13554 - 5-prime edge
    TCCTACTTTC TCCCTGTGCA CAGCCATCAT GGAGAAGATC CTCACTTCTC 
    TTCCTAAGAA TGTTTCTGAG ACATCTTCTG CTCCACTCAA TAGGTATGTC
    AAGCAACTTG TTGACAATGG TATTAGCTCA GATGAAGCTA AATTGCTGAC
    AAGGGACATC AATGCAATCA TGCTGCCTAA GGTTAAGAAA GAGAAGGCAC
    AAAGAGTGGA CATTGCTGAG TACATCCGCA CCATCACTCT TGATCAGACC
    ACTGAGAAGC TCCCGGATCC AGGTAGCTTT GTTCTTGATT GCTCTATCTC
    CACAAGCAGG TTCAGCCGCT CTTTGTGTGA CATGGTATCA AGTAACAACC
    TCATGCCTAA GTCTGTTGCA GAGAGATTAG GCATGACTAA CTACATGCCG
    ACTAGAATCA CTCTCCTCTT TGCGGATCGT TCCAAATGCA TCCCTGAAGG
    AATCCTTGAG GATGTTCCTG TTAAGGTTTG TAACTCCTTA ATCCCTGCTG
    ATTTTGTGGT CCTGGACTAC GATAAGGAAC CCAAGGATCC TCTTATCCTT
    GGAAGAGCAT TCCCAACTAT AGTTGGTGTT AGGATTGATG TGAAGAAAGG
    TAGGATCTCT CTCAAAGTTT GTGATTTGGA GATGGAGTTT GGCATGGATG
    GTTC

AT4G04145.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.8e-189 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)
Link
InterPro Scan - TAIR

AT4G04150.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 2.0e-27 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR