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GT13578

CSHL Arabidopsis genetrap mutant lines

Original: GT13578

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13578

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13578 - 3-prime edge 
    TTTCCCACCG TTCCCTACCG TTTTCATCCC CACCCGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 255372 [Map]; Strand: w
      • AT3G01680.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR02164...
        Distance: 0; Region: exon9 (3UTR)
    Flanking Genome Sequence: GT13578 - 3-prime edge 
    GGTAGAGGAT TTTACCGACC GTTACCGACC GTTTTCATTG ACACATGGAA 
    TGACCTATTC TCTCTCATAC AAAGACATTG AAATTCAGAA ATTATTTATG 
    AAAAACTATA TAGAGAATTC AAATTACGTA AAACAAAAAG AAAAAGCAGC 
    GGGAAGAGAC GTGAGCTTAT TGCATCATTT AGAAGTTGTA GTTCTCGTCT 
    TCGTGGAGCT TTTCATCGTG ACAACAAGAG AAGCTCATGT ACTTCTCCAT 
    CGGACGCTGA CACTCGAAGC AATTCATCTT CTCCGGAAAC CGACCGCTCC 
    GAGCAGTGAT GTGGAAATCA AAGTGGCCGC AAGGTTTTCC GGTTTCACGG 
    AGGACCTCAT CGTGGTGGTG GTCGGACATT GCTTTGGTGT AGCCTTTGGT 
    CGGGACGTGG GTTTTCCAGG TCCGGTCGTA AACACTCATA GTCCTCTCTA 
    TGGCACCGTG AGCGATCATC ACTATCTCAG GTCCTTTGCT CAGTAGTGCC 
    CATCCTCCAA GCTTGTCGTA GCTTAGTATC TTTTTGATTC CTTGCATCAC 
    CTAATCAACG TTTTCAAACA CACAAAATCA TTCATTAACC AATTGAACCG 
    AACCGAACCG AAATAATTGA AAACCCTAGC TAGTCAACTC TTACATCGTC 
    GTGATCATCG GCTTTACCGA GTTGAATCTT GGAGTACAAC ATGCTCTCGA 
    GCCTAGTCCA GAAGACCACA TCAAGGCAGG TTCGGCCCAG CTATGGCTCA 
    GGTTTTCAGA CCTGATTACT TCACTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 255576 [Map]; Strand: w
      • AT3G01690.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -961; Region: promoter
    Flanking Genome Sequence: GT13578 - 5-prime edge 
    CCTGATGAAT CACACCAATT TTGAATATGT CAAATTAGAC CAAGTCAAAA 
    TATAACTATT TGCTTTCTTT CATCTCACTC GACAAGAAAA TCTACAAAGA 
    ATG

AT3G01680.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01690.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G14390.1); Has 3903 Blast hits to 3890 proteins in 823 species: Archae - 8; Bacteria - 1296; Metazoa - 705; Fungi - 204; Plants - 316; Viruses - 6; Other Eukaryotes - 1368 (source: NCBI BLink).
Link
InterPro Scan - TAIR