1. Home
  2. Mutant Lines
  3. GT13666

GT13666

CSHL Arabidopsis genetrap mutant lines

Original: GT13666

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13666

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19669776 [Map]; Strand: c
      • AT2G48090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -12; Region: promoter
      • AT2G48100.1 - [+] show detail - Exonuclease family protein
        Distance: -725; Region: promoter
      • AT2G48100.4 - [+] show detail - Exonuclease family protein
        Distance: -725; Region: promoter
      • AT2G48100.3 - [+] show detail - Exonuclease family protein
        Distance: -779; Region: promoter
      • AT2G48100.2 - [+] show detail - Exonuclease family protein
        Distance: -909; Region: promoter
    Flanking Genome Sequence: GT13666 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CGGTGATCTG TGCAGAGAAG 
    ATAGTGACAT TAACGAGCTT TTTATAATGC AAAATCTATG TGATTTTATC 
    TTTGTTAATT GCAGAATAAC GTGTTTCAAC ATGCAACAAG CGAAGAAATT 
    ACAACTTGTT GAAAAGAGGA AAGTTGGAAA CTTTTACAAG TTTTTCAAAA 
    AAGGAAGAGT GATGTTAGAA AGGGATCGGA TTCTGATTCC ACTATGTTTT 
    CTTTCTTTCT TTCTTCTTCG TTGTTTTTGT TTTGGATTGT TACGTTCCTG 
    TCAGGATTTG AGAATCATGC ATCAGCTGTC ACTCCTCTCA GGAGGGGGAG 
    ATTATATCTA CTTGTAACAT ACTAATCTTC CAATAAATAA GCACTTCACA 
    TATTATTAAA ATACAGTAGA TTCTCATAAT TAGGCCATTT TCCATAAGCT 
    TTTGTTTACT TATTTCAATC CACTAGTATG CTTTTCACAT TATTCTTTCC 
    CCTGCAATTA AGCATGAATC ATGTATGCAA TTTAGCATGA ATCATATATA 
    TGAAACGGGG GTTTACTAAA ACTCTATACA TAAATTTCTA AAACTCTAAC 
    CCACTCCAAC CCCGGTTT

AT2G48090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, root, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48100.1

Model type
Protein coding
Short Description
Exonuclease family protein
Computational Description
Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1569 Blast hits to 1569 proteins in 234 species: Archae - 0; Bacteria - 15; Metazoa - 734; Fungi - 438; Plants - 246; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48100.2

Model type
Protein coding
Short Description
Exonuclease family protein
Computational Description
Exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48100.3

Model type
Protein coding
Short Description
Exonuclease family protein
Computational Description
Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48100.4

Model type
Protein coding
Short Description
Exonuclease family protein
Computational Description
Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT3G27970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR