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Mutant Lines
GT13672

GT13672

CSHL Arabidopsis genetrap mutant lines

Original: GT13672

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13672

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 18209045 [Map]; Strand: w
  - AT2G43970.1 - [+] show detail - RNA-binding protein
    Distance: -827; Region: promoter
  - AT2G43970.2 - [+] show detail - RNA-binding protein
    Distance: -827; Region: promoter
  - AT2G43980.1 - [+] show detail - inositol 1,3,4-trisphosphate 5/6-kinase 4
    Distance: 0; Region: intron9 (CDS)
Flanking Genome Sequence: GT13672 - 3-prime edge
```
TGGATACCCA AATCTAGGGC TCCTAAATCA AGATGTCAAG CATAGAAAAA 
CTTCTCAACC CGATGTTTTG CAGGAGTATG TGGGACCCA
```

5 prime edge [+] show sequence

Chromosome: 2; Position: 18209161 [Map]; Strand: w
- AT2G43970.1 - [+] show detail - RNA-binding protein
  Distance: -943; Region: promoter
- AT2G43970.2 - [+] show detail - RNA-binding protein
  Distance: -943; Region: promoter
- AT2G43980.1 - [+] show detail - inositol 1,3,4-trisphosphate 5/6-kinase 4
  Distance: 0; Region: exon9 (CDS)

CTTTCTCCCT ATTAATTATG ACTTACTTGG ATAATGGCAG GAACAGGAGT 
GTTCAGATTC TTAAAATCCT CGACTCGGAA GACAATGGCC TGTGAGAAAC 
ACATGAAAAC GAGGAATTTT TTTGTTCTGC TGTGAAAAGA GCAACAGATA 
TTGCGAGATA TCAAATCTAG ATGGAAAGTA TGAGATATTC ACCATGCTGT 
GAGCATCAGC AACACCACAG GCAACCTGTG GTTTCACAAT ACATGGAAGA 
GAGAGTCCAG CTCTTGACAA GTTCTGAGCC AGATCTGGTT CATCATAGCT 
GTCAATCTGT AGATAAGGAA CTCTGATATT AATTTGCTAA AGTAAAAAAG 
AAAAGCATCA ATGCGAAACT GGAGAAGTTA AGAGGCCAGA CTAAAGGTCT 
CAAGAGATAA CTATGTAAGA TTATAAGCAT AAAGAAGATT GACGAGTTGA 
TCAAAATGAG AGGACTTTTA CGACCTTGAG AAAGCAGGCA CCTCTTATCT 
TTCGTCCTGC TGCACCAAGG CCCTCTAATC CAAGAAGAAT ATGTTGCATC 
TTGAGTCGGT CTACGACTGG ATATATATTT CGAATAGGGT CGACTATGGC 
ACAAGCATTT TGATCTTCCA TATACCTGCA AATACCTTAT ATCATTATGC 
AAACCTGAAT GGAGAATTTT TAACAAGGTT TCTCATATTT GTGTATGATG 
GTATCTATAC GCCACTTGCA GATATAACTG AGTGCTAGAT TGAAAACAAA 
GAATTGAGAA GCTTACTTTT TCAGTTTCTC CATGCCGGTA GAAGATGTAA 
CTGCAACAGA TGATTTTGA

AT2G43970.1

Model type: Protein coding
Short Description: RNA-binding protein
Computational Description: RNA-binding protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1); Has 5436 Blast hits to 4197 proteins in 373 species: Archae - 4; Bacteria - 353; Metazoa - 1802; Fungi - 477; Plants - 426; Viruses - 18; Other Eukaryotes - 2356 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G43970.2

Model type: Protein coding
Short Description: RNA-binding protein
Computational Description: RNA-binding protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1); Has 5536 Blast hits to 4258 proteins in 377 species: Archae - 4; Bacteria - 395; Metazoa - 1833; Fungi - 479; Plants - 433; Viruses - 20; Other Eukaryotes - 2372 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G43980.1

Model type: Protein coding
Short Description: inositol 1,3,4-trisphosphate 5/6-kinase 4
Computational Description: "inositol 1,3,4-trisphosphate 5/6-kinase 4" (ITPK4); FUNCTIONS IN: magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, catalytic activity, ATP binding, inositol tetrakisphosphate 1-kinase activity; INVOLVED IN: inositol trisphosphate metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol-tetrakisphosphate 1-kinase, uncharacterised-N-terminal (InterPro:IPR017418), Inositol 1, 3, 4-trisphosphate 56-kinase (InterPro:IPR008656); BEST Arabidopsis thaliana protein match is: Inositol 1,3,4-trisphosphate 5/6-kinase family protein (TAIR:AT4G08170.2); Has 388 Blast hits to 384 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 245; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Link: InterPro Scan - TAIR