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GT13674

CSHL Arabidopsis genetrap mutant lines

Original: GT13674

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13674

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 32911 [Map]; Strand: c
      • AT4G00080.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -889; Region: promoter
    Flanking Genome Sequence: GT13674 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATACCA TCCACCGATT 
    AAGCTACATA TCCTCTCAGT TAATTCTCTA ATTCGCCATG GCGGCTAACA 
    ACAAATTGTT CTTTGTATTA CTCTCCCTGT TCCCTCTCAT CATCTTCTCG 
    GCAACCGCCA CGTCATCAAA AGACTACGAC ACGAAGGCTT ACGTGCACTC 
    ATGGTGCCGA ACAACCTTAT ACCCGAAACT ATGCGTCCGG TCGATGTCTC 
    GTTACGTGCG TTCACGCGCG GTGCAAAATC CACGGGATCT GGCCCGATTT 
    GCGCTCAAAG CCAGCCTATA TAGAGCTAAG TACACAAAGG CGTTCTTGTT 
    AAAAGAGGTT AAGAACTTGG AGACGACGTT GAGGCCCCAA TACTACGCGT 
    CGGTTCACGA CTGCTTGGAC CAAATAAGAG ACAGCGTGAA CCAGTTGAGT 
    CTAGCCATAG CGGAGCTAGA CAGAGTCAGC AGGAGACAGG GAAAGAGCCA 
    AGGGGATCTA CACTGGCATA TAAATAACCT GCAGACGTGG ACAAGCACAG 
    CTCTTACAGA CGCCGAGACT TGCGTGAGCC AGTTCCCGGG ACGTAGGATG 
    AGCAAACTTA AGGCTACGAT TAAAGGAAAA GTGAAGAATG TGGAGGAAAC 
    AACTAGTAAT GCCCTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 32845 [Map]; Strand: c
      • AT4G00080.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: -48; Region: promoter
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -955; Region: promoter
    Flanking Genome Sequence: GT13674 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GTATAATATT TACGTGTCTT TGTGTGTGTC 
    CCTTATATAT ACTGTATGCA TCATTTTGCA TGGCACGTGA ATAAGAATGA 
    GCTGGATTTA AGATCACTTG ACTTGGATTT GTTTTTGTTT GTTAATTCAA 
    TTGATGAGCA GCTAGAGTTT GAAGGAAGGT TACAAGAAGG CCGGTAAAGC 
    AAGTACCATA TATCATAATT AAATTAATTA TAAGTGTATT CGTATAAAAT 
    CAATTTTGAA CGTGATTAAA GATATTTATT CTAGCTAGGC ATTTGACCAG 
    ATGAATTAAA GTATCTAACG TCTCATACCA AAACCTGTTG TATATAGAAC 
    AGGCAGGATC TACGTTATGA AACATAATCT TATATAATGT GAATATTATA 
    TGTGTATACT CACACGCGTA ATGGAGAGGG TTTAACTGTT GACCCAAAGG 
    GGGCGGCGGA GAAGACGAAA AGGAAGAAGC TCGTGGCCAA CAAGATCCTT 
    TTTTATAGCA CCTTCCCTTC ACTCTTTAAG CAAATCTGCA CACACTT

AT4G00080.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
unfertilized embryo sac 11 (UNE11); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G62770.1); Has 574 Blast hits to 571 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 574; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR