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GT13711

CSHL Arabidopsis genetrap mutant lines

Original: GT13711

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13711

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17702122 [Map]; Strand: w
      • AT2G42500.1 - [+] show detail - protein phosphatase 2A-3
        Distance: -705; Region: promoter
      • AT2G42500.2 - [+] show detail - protein phosphatase 2A-3
        Distance: -705; Region: promoter
      • AT2G42500.3 - [+] show detail - protein phosphatase 2A-3
        Distance: -705; Region: promoter
      • AT2G42510.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, ...
        Distance: 0; Region: exon1 (CDS)
      • AT2G42510.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, ...
        Distance: 0; Region: exon1 (CDS)
      • AT2G42510.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13711 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CATACGACGA 
    ACCCATCAGT CTCAACAACA TCCTTTATCT TGAGCACATC ATCTCCAAGT 
    CGATCGCCTT CTGTAGTAGA AATCTCAGAG CTTTCCTTAA TCTCTTCACC 
    AACCTTATTC TCTTCAAGAA TCGTGGAACC ATTTTCAGGT ACAGAGACTA 
    CTACTACTCC AGGACACTCC ACATTCATCC TCACTCGA

AT2G42500.1

Model type
Protein coding
Short Description
protein phosphatase 2A-3
Curator Summary
Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
Computational Description
protein phosphatase 2A-3 (PP2A-3); FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-4 (TAIR:AT3G58500.1); Has 6823 Blast hits to 6634 proteins in 485 species: Archae - 80; Bacteria - 208; Metazoa - 2397; Fungi - 1409; Plants - 992; Viruses - 2; Other Eukaryotes - 1735 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42500.2

Model type
Protein coding
Short Description
protein phosphatase 2A-3
Curator Summary
Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
Computational Description
protein phosphatase 2A-3 (PP2A-3); FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-4 (TAIR:AT3G58500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42500.3

Model type
Protein coding
Short Description
protein phosphatase 2A-3
Curator Summary
Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
Computational Description
protein phosphatase 2A-3 (PP2A-3); FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-4 (TAIR:AT3G58500.1).
Link
InterPro Scan - TAIR

AT2G42510.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 358 Blast hits to 335 proteins in 89 species: Archae - 4; Bacteria - 46; Metazoa - 66; Fungi - 14; Plants - 57; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42510.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 297 Blast hits to 270 proteins in 80 species: Archae - 2; Bacteria - 35; Metazoa - 62; Fungi - 11; Plants - 64; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42510.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 229 Blast hits to 211 proteins in 63 species: Archae - 4; Bacteria - 35; Metazoa - 50; Fungi - 9; Plants - 20; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Link
InterPro Scan - TAIR