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GT13790

CSHL Arabidopsis genetrap mutant lines

Original: GT13790

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13790

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7369110 [Map]; Strand: w
      • AT4G12430.1 - [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
        Distance: -380; Region: promoter
      • AT4G12432.1 - [+] show detail - conserved peptide upstream open reading frame 26
        Distance: -380; Region: promoter
    Flanking Genome Sequence: GT13790 - 3-prime edge 
    TTTACCGACC GTTACCGAGC GTTTTCATCC CTACACAGAA TGCAAAACGT 
    TTGTGAATTT ATATATTCTG GCATAACGAA TAACTTAATT AATCTCATCT 
    CTTATAAAAT ATTTCTTGTA TACAACAAAA AGATCTTTAT AATAAAAATC 
    TTTGACCGAC CTTACTAAAA GTGAAATAAA CAAACCGCCA TAATTTGTAA 
    TCGAACCAAA AATCGTTTTC GAAATCTCTG AAAATCGCGT ATGACTAAAT 
    GACAAACTCA TAACGTGTTA TTGATTGGTC GACCATTTTA AAATGATGGC 
    AAATTTTGGT AAATAAACCC AACATGGACG GT

AT4G12430.1

Model type
Protein coding
Short Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G22590.1); Has 2381 Blast hits to 2375 proteins in 851 species: Archae - 41; Bacteria - 1352; Metazoa - 219; Fungi - 150; Plants - 494; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G12432.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 26
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF26 represents a conserved upstream opening reading frame relative to major ORF AT4G12430.1
Computational Description
conserved peptide upstream open reading frame 26 (CPuORF26); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR