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GT13795

CSHL Arabidopsis genetrap mutant lines

Original: GT13795

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13795

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21603613 [Map]; Strand: w
      • AT3G58400.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT13795 - 3-prime edge 
    AAGGGATATA ACTTTATTGG TTACTTGTCT CTGTATCTGG AAGTCGCCGA 
    TAATGGATCA TTGCCTTTTG GATGGAGAGA CATGCTCGAT ATACCCTAAC 
    TTTAGTAAAT CAAAACTCGA AAAAAGCTTC CAACCAAATG GTGATTATTT 
    ATTTGCCTAG AGCATAGTTC AAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21603735 [Map]; Strand: w
      • AT3G58400.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT13795 - 5-prime edge 
    TTTGGATAAG CAGTTAGACA CCTGCAAGAA ACACAAATAA TATAAAAGCC 
    TCTGCAAACC GAAGAAGAAT ATAATATCCC CTAAACCTAC CTCTTCTTAC 
    CATTTGCAGC CATCGACGAC AAAAGGATGC AGGGATACCC TCAAAAGGAG 
    AATCATCTCC GTAATCAAAT TCTGGCTCCG ACTCCTCTTC ATACGCAGAA 
    TAATCACTCA TGTAGTTATC TGGATATGAA TAATCACTAT CATATTCGTA 
    CTCGCAGTCC TCTGATACGC GTTATCATGC TGCAGCAAAT CCTCTTTATA 
    TGCATGACGA TCGTAATTCA TAAATCTTCT TTAGTGCTTC TTCGTCAAAA 
    AAGAAAATCT TCTTAATTTC CATTACCATC CTCACAACGC TGTTCCCCAT 
    CGAAATTATA GGAACCTCTC CCGTTCAAAC TGCAGAATGT AAAAAAGAAA 
    CCAGAAATCA GTACTTTTAA AAGGAACATT GTTTAAAATC AAACGGAGAA 
    AAAAGAGATT ATACATACCA AGCTAGCTAG CTAGGGAGTT TTATCTAATT 
    CGTGAGTTTC TTCAGAATGG AAGAGATGGA TATATATAGG ATGATAAATG 
    ATTGATACCA AAAAT

AT3G58400.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: RESTRICTED TEV MOVEMENT 3 (TAIR:AT3G58350.1); Has 513 Blast hits to 461 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 505; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR