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GT13831

CSHL Arabidopsis genetrap mutant lines

Original: GT13831

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13831

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18796157 [Map]; Strand: w
      • AT2G45630.1 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G45630.2 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13831 - 3-prime edge 
    GGAGATGGAG TCAGAGTGAT AGGCCAAGAA TTCAGGAAGA GGAAGCGGAG 
    ACTCGAAGGC TTTGAGGATC TCGAACTTGG TGGAGGCGAC GAATCCGTCG 
    CCTAACACAG CCATGGCGTC GGGACGTTTG ACGATGAGGA CACGTGGCAG 
    TTTCTCGGTG GAAGAGCTCG TCGCCATCGT TGCGACTTGC GAGATTGATC 
    TGTTTTGCAT TATTATTAAA AAATTGTTTT CAAAATTATC TCACTTCTTT 
    TTTCAAGTCA CGCAAATAAC ACGACACGTT TAAGAAATCC ACCCACATCA 
    CCATCATACA AAAATCTTCA AAACTAGGAC CTTTCTTTTT GTGGGGTCAC 
    AAGCAAGATT TCAAATCACA ACCAAAAAAG CAAAAAGAAC AGAGCATGAA 
    TCTTCTACCC ATAAATATAT ACAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18796287 [Map]; Strand: w
      • AT2G45630.1 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT2G45630.2 - [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT13831 - 5-prime edge 
    CCCTACCTGG TAGCTGCTCC GGTCACAGCC GATCTGATTC GCATCCTCCC 
    TAATCTTCGC TTGGTTGTTA CTACTAGCGC CGGCGTTGAC CACGTTGACC 
    TAGTTGAATG CCGTCGTCGA GGCATCTCCG TCGCCAACGC TGGCTCAAGC 
    TTCTCCGAAG ATGTCGCAGA TACTGCCGTC GGTTTACTCA TCGACGTCTT 
    CCGCCGTATC TCCGCCGCCA ATCGGTTCGT TAAGCAACGG TTTTGGCCAG 
    TCAAAGGAGA TTATCCCCTC GGTTCTAAGG TTTGCAACAT AACTTGTGAA 
    AAAAAATCAA ATTAGCAACA AATATTTAAT GTTAATGGTT CCCTCTAATT 
    TGCAGTTGGG GAGAAAGCGA ATCGGAATCG TGGGACTAGG AAGCATTGGC 
    TCGAAGGTAG CGACAAGGCT CGAGGCCTTT GGTTGCCAAA TTTCATATAG 
    CTCAAGAAAC AGAAAACCAT GTGTTCCATA TCATTATTAC ATGGATATAG 
    AGGAGATGGC AGCTACTAGT GATGCACTCA TAATCTGTTG TGAATTGAAT 
    GAGAAGACAT TGCGTTTGAT TAATAAAGAT GTTCTTTCTG CTCTGGGAAA 
    GCGAGGAGTG ATCGTTAACG TGGCTCGTGG GGCTATAAT

AT2G45630.1

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: NAD or NADH binding, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 6623 Blast hits to 6621 proteins in 1548 species: Archae - 250; Bacteria - 4438; Metazoa - 370; Fungi - 171; Plants - 170; Viruses - 0; Other Eukaryotes - 1224 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G45630.2

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: NAD or NADH binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, binding, catalytic activity, cofactor binding; INVOLVED IN: metabolic process; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR