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GT13860

CSHL Arabidopsis genetrap mutant lines

Original: GT13860

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13860

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30111950 [Map]; Strand: c
      • AT1G80040.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -670; Region: promoter
      • AT1G80040.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -680; Region: promoter
      • AT1G80040.3 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -670; Region: promoter
      • AT1G80050.1 - [+] show detail - adenine phosphoribosyl transferase 2
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT13860 - 5-prime edge 
    CCTACTTTCT CCCTAAAGTG AGTCTCTTCT ATGCACTTTA GAGCGTGCCG 
    GGGCCGAAGT TGTAGAGTGT GCATGCGTTG TTGGTTTGCC TAAGTTTAAG 
    GTACTATATG ACCTACTTTG TTCGTTTGCA TAAGTTGAAG GTCTTTTAAA 
    TTCGCGTCAA TAATATTTTG GGCTTTAATG GGCGCTATAG GCCCATACAT 
    TTGAAGATAA TAAAATAACT CATTGTCTAC GATATGTAGG GGCAGTGTAA 
    GCTGAAGGGA AAGCCTTTGT ACGTTCTGGT GGAACCAAAC CAGTTTGATG 
    AATTAACCTT ATAAAAGCCT TTTCTATTCA ACGATTATGA CAAATAATGT 
    AATCGGTTTA ATCGATTTTG TAACTAAGGA TTTGTTTGTT TTCTATTGGC 
    TCCATGTGGA ATGATTCATG CTAGTTACTA TGAAATTCGG AATACGAAGG 
    TATGCAGTAT TATGCACCAC TGTTCTTCAG ATGAATGAAT TCAAGTCGAT 
    TTTCTAGTGA TTTACATGGC AGAATTTATA AATAATATAC ATCATATTGT 
    TTGTTAGATA ACTTTACTAA GGGGGCAAAA AAGGAATTAT CAGATAAACA 
    AAATATTTGA AAAAAGAAAA AAACGTTGGC AGGGAGTTTC ACGCGCAACG 
    CAACGCGCCC ATGTGATTAA CAGAAGTACG AGAAAGCCCC TGCCGCTTAA 
    AGATCTGTAT ATAAAAA

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT13860 - 5-prime edge 
    TCCTACTTTC ATCCCTAAAA GTGAGTCT

AT1G80040.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80040.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80040.3

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1).
Link
InterPro Scan - TAIR

AT1G80050.1

Model type
Protein coding
Short Description
adenine phosphoribosyl transferase 2
Curator Summary
Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol.
Computational Description
adenine phosphoribosyl transferase 2 (APT2); FUNCTIONS IN: phosphate transmembrane transporter activity, adenine phosphoribosyltransferase activity; INVOLVED IN: adenine salvage; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: adenine phosphoribosyltransferase 5 (TAIR:AT5G11160.1); Has 8411 Blast hits to 8411 proteins in 2474 species: Archae - 199; Bacteria - 5670; Metazoa - 171; Fungi - 181; Plants - 165; Viruses - 0; Other Eukaryotes - 2025 (source: NCBI BLink).
Link
InterPro Scan - TAIR