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GT13903

CSHL Arabidopsis genetrap mutant lines

Original: GT13903

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13903

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9988617 [Map]; Strand: w
      • AT5G27950.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 627; Region: intergenic
      • AT5G27960.1 - [+] show detail - AGAMOUS-like 90
        Distance: 3068; Region: intergenic
    Flanking Genome Sequence: GT13903 - 3-prime edge 
    GTTATGGGTT TGGCCTTTGC GTAATGATAT GTTGGCCTTG GTGTTGCATG 
    GCTTGAGATG AGTTGCATCA CATCATTAAC ATAAAGATCC TCTGCAAGGT 
    CCACCAAGGC GTAAACTCTA AGATGATTCT CCAAACCTTG GATTTCAACG 
    CTTTGGAGAG TGTTTCTTTT GGGATTGAAG TATAAAACAT AAAAAGGTTT 
    GGATGTATAT CTCATTGAGA AAACAATTTC ACCGGTAGCA ATCACTCCAA 
    GGATTAAATG ATTCTTGGGA TTAAACACAG CCAAATCCCC TAAAGTGTAG 
    ACATGTTTCG ACCATT

AT5G27950.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G55550.1); Has 10282 Blast hits to 9806 proteins in 314 species: Archae - 0; Bacteria - 8; Metazoa - 4569; Fungi - 1388; Plants - 1826; Viruses - 0; Other Eukaryotes - 2491 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G27960.1

Model type
Protein coding
Short Description
AGAMOUS-like 90
Computational Description
AGAMOUS-like 90 (AGL90); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 36 (TAIR:AT5G26650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR