Home
Mutant Lines
GT13926

GT13926

CSHL Arabidopsis genetrap mutant lines

Original: GT13926

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13926

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 24374214 [Map]; Strand: c
  - AT5G60640.1 - [+] show detail - PDI-like 1-4
    Distance: -176; Region: promoter
  - AT5G60640.2 - [+] show detail - PDI-like 1-4
    Distance: -176; Region: promoter
  - AT5G60640.3 - [+] show detail - PDI-like 1-4
    Distance: -176; Region: promoter
  - AT5G60650.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: 0; Region: exon1 (3UTR)
Flanking Genome Sequence: GT13926 - 5-prime edge
```
CTTTCATTAC TCTTTTCAAG ATTTTGTCAA ATTTCTATTG TTTTGATTAT 
GTAGAACGTT ACAATGTGTC AAAGAAAACA TTTCGGTTCG GTTTAGTTTA 
ATTTGTTCGG TTTATATATT TTTCTGGTTA AGACTTAATT ATAGATTTAT 
AGTCCCTAAT AATTTAATTT GATCCTAAAA CGAGGACGTT TGATTTGGTA 
ACAACGAACA ATGTACTAGA AAAGAAACAA GCTTGTATTG TACTCGTAGT 
TGTTAGATCT CAACAACAGA GTCGCACACA CTAAAATGGC GTTCCGCGTT 
TTGCTCTTCT TCTCACTCGA CGAACTTCTC ATCTTCTCCG CCGTTTCTCC 
TTCTTTCGCC GCTTCATCTC ACTCGACA
```

AT5G60640.1

Model type: Protein coding
Short Description: PDI-like 1-4
Curator Summary: Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.
Computational Description: PDI-like 1-4 (PDIL1-4); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-3 (TAIR:AT3G54960.1); Has 27268 Blast hits to 18617 proteins in 2977 species: Archae - 300; Bacteria - 12440; Metazoa - 5251; Fungi - 1704; Plants - 2409; Viruses - 19; Other Eukaryotes - 5145 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60640.2

Model type: Protein coding
Short Description: PDI-like 1-4
Curator Summary: Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.
Computational Description: PDI-like 1-4 (PDIL1-4); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-3 (TAIR:AT3G54960.1); Has 27450 Blast hits to 18470 proteins in 2952 species: Archae - 294; Bacteria - 12373; Metazoa - 5455; Fungi - 1702; Plants - 2434; Viruses - 19; Other Eukaryotes - 5173 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60640.3

Model type: Protein coding
Short Description: PDI-like 1-4
Curator Summary: Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.
Computational Description: PDI-like 1-4 (PDIL1-4); CONTAINS InterPro DOMAIN/s: Disulphide isomerase (InterPro:IPR005788), Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-3 (TAIR:AT3G54960.1).
Link: InterPro Scan - TAIR

AT5G60650.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR