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GT13955

CSHL Arabidopsis genetrap mutant lines

Original: GT13955

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13955

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1416621 [Map]; Strand: c
      • AT4G03210.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: 0; Region: exon3 (CDS)
      • AT4G03210.2 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: 0; Region: exon3 (CDS)
      • AT4G03220.1 - [+] show detail - Protein with RNI-like/FBD-like domains
        Distance: -851; Region: promoter
    Flanking Genome Sequence: GT13955 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC ATATCTACGT GAACGGAGTT 
    GGAAACATTG AAGGAAGACT CAACCTTTGG TTCGATCCCA CCACTGCTTT 
    TCACACTTAC TCAATCCTCT GGAGTAAACG CAGTGTTGTG TAAGCTCTCT 
    TATACAAACA AAGTCTCTTC CTTTATTTGA TTATTGAAGA CCCATTTTAA 
    TGATGTCTTC ATTGCAAATA CAGATTCATG TCACTCGACA AACCGATTCG 
    AGTTCAGAAG AATCTTGAAG AGAAAGGTAT CCCATTTGCT AAAGATCAAG 
    CAATGGGTGT TTACAGCTCC ATTTGGAATG CAGATGATTG GGCTACACAA 
    GGAGGTCTTG TTAAAACTGA TTGGAGTCAC GCTCCTTTCG TTGCTTCTTA 
    CAAAGAATTC CAAATCGATG CATGTGAGAT TCCAACTACT ACTGATCTAA 
    GCAAGTGTAA TGGAGACCAG AAATTTTGGT GGGATGAACC AACTGTCTCT 
    GAGCTTAGCC TTCATCAGAA TCATCAGCTT ATTTGGGTTC GAGCTAATCA 
    TATGATTTAT GATTATTGTT TTGATGCTAC TAGGTTTCCT GTTACTCCTC 
    TTGAGTGCCA ACATCATCGT CATTTGTAGT TTAGAAATTA GTCAAGAATA 
    AAAATGGATC AAGAGAACAT GTGGTACTCT TTGATGATTC TGTTTTAATG 
    TATAAATAAT CAATTTCTAT TGATTTTGGT GAAGTTTTCA AGTTAGGATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1416521 [Map]; Strand: c
      • AT4G03210.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: 0; Region: exon3 (CDS)
      • AT4G03210.2 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: 0; Region: exon3 (CDS)
      • AT4G03220.1 - [+] show detail - Protein with RNI-like/FBD-like domains
        Distance: -951; Region: promoter
    Flanking Genome Sequence: GT13955 - 5-prime edge 
    GGACTATGTA AGGCTCGCCG GTAGTGTTCC CTAAGAACTC AAAATCTAAT 
    TCGTTGTGGT TCGGACCATC TGAAGACATC TGTAAGAGAA AAAAAATTGT 
    CACATTTCAA GATTTGAGAC ATAATAATCA AATAGGGGAT TAAAAACAGA 
    ACAAGAAGAG ATGGGTTTTG TTCCGTACGT AGAAAGCAGT GACTGTTCCT 
    GCTGAATCAC CCTCAACAAG CTTAATCTGG ATAGAGACTT TACCAAACAA 
    GTATTTGCTT CTTGATTCAA ACCCAGCTCC TGAAAAATTA AATAAAAACA 
    TATTCAATTA TAATGAACCC ACAAAAACAG AGGAAACAAA ACAGAGATGG 
    CACCAAAAAC AGAGGAAACT AAACAGAGAT GGGTTTGTCT TCATCTACTT 
    ACCAGAGTAA TTGTCAAGCT TGAGTTTTGT GACTTCGCCT TCGTTGACAC 
    AATGATCCAT AGCCCAGCTT GACCGATAAA GCTCATCGAA CTTAGCTCCA 
    GAAACAGCTT CACCACAAGA GACAACCAAC ACCATTATCA TCATTACACA 
    TTTGAACAAA TCCATACCGA CCATTTTTTT TTTAACTTAT CTCTCTAAAT 
    AAATCAAACT TCCCTCTACA GTCTCGGGCC CTTGACTCAA TGAAGG

AT4G03210.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Beta-glucanase (InterPro:IPR008264), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2067 Blast hits to 2047 proteins in 283 species: Archae - 0; Bacteria - 225; Metazoa - 0; Fungi - 377; Plants - 1377; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03210.2

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03220.1

Model type
Protein coding
Short Description
Protein with RNI-like/FBD-like domains
Computational Description
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G59210.4); Has 1478 Blast hits to 1464 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1476; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR