1. Home
  2. Mutant Lines
  3. GT13962

GT13962

CSHL Arabidopsis genetrap mutant lines

Original: GT13962

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT13962

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15683715 [Map]; Strand: w
      • AT4G32500.1 - [+] show detail - K+ transporter 5
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: GT13962 - 3-prime edge
    TCAAACCAGC TAAAATGTTG TAGTCACTAT GGATTTATAC GGAAATAGCT 
    TCGGACTAAC CTGAAGAAGA TTATTCATGA TTATTGCCCC ATCACCAACG
    TTTGCCTGAA CAAGATTTAA GAATGCTGTA CGGTTCAGAC GAAGCAATTG
    ACTCAATCGT TTGGTTCGAA CTGTGAACAA CTGTGGCCTG TAACATAGAA
    CCCCAACTTC ACCAAAAACA TGGCCGGTCT GTGCTTCACC AACTACCTGC
    AATGAATACA CAACTCACAA CTTAAAAACC GTCACAAAAG AGAAATAAAA
    ATGCGGATTT TACCTGATCC ACTCCATTCA CACGCGCAAT GATGTCCTGT
    CATATAGTAG AAATGTCAAC TAATTTGAAA AAAGAACTAG GAGAAATAGA
    ATTGTTTAGC TGATGTAACC AAAGCAACTT ACAACAGCTC CTGTGACCAT
    TATGTAAAAG TCTGACGGTG CTTCATTCCG CAAAATCACA TCTTCTTTAG
    GAGGAAATAC TCTG

AT4G32500.1

Model type
Protein coding
Short Description
K+ transporter 5
Curator Summary
Encodes AKT5, a member of the Shaker family potassium ion (K+) channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).
Computational Description
K+ transporter 5 (KT5); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding; INVOLVED IN: potassium ion transport, N-terminal protein myristoylation, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Shaker pollen inward K+ channel (TAIR:AT2G25600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR