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GT14024

CSHL Arabidopsis genetrap mutant lines

Original: GT14024

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14024

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1873421 [Map]; Strand: c
      • AT4G03935.1 - [+] show detail - other RNA
        Distance: 0; Region: intron2 (NonCoding)
      • AT4G03940.1 - [+] show detail - unknown protein; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bac...
        Distance: -203; Region: promoter
    Flanking Genome Sequence: GT14024 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTATGAG 
    TTATGTTTTA ACCACAGTTA GTGGTTCAGT TACCAATACT AAGCAGTCGC 
    TACCTCAGAA GCACGCTACC TTAATCTTTA AAAGACCAGG GTTTTAGTAG 
    ACAATCGAAA TTAACTTATG TATTTTTCTT CCAATTTTAA AAGTACATGT 
    ATTAAACGGC CAAATTAAAA ATAAATCATG ATATTATTCT TTTATAATTT 
    TTTCCATGAA TTTCTACAAA GATGGTAAGA AAGTGATATC TGGGAAATAT 
    CACGAAGGGC TTTACTATCT TGAAGGCACG GTTGTTAAGG CTGAAAAGAG 
    TGTACCACAT GCTGAAAATG GTGGAAAAAG TGTTGTCAAG GCTGTAGTTG 
    GAGTGAGGAA GAAGAAGTCA AGGAAGGTGA CTTTCAGCGT GAATTTAATT 
    TAAGGACCTA CTCCATATGG CTTTGGAACA AAGGAATAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20686556 [Map]; Strand: c
      • AT3G55730.1 - [+] show detail - myb domain protein 109
        Distance: -2503; Region: intergenic
      • AT3G55734.1 - [+] show detail - MIR393B; miRNA
        Distance: -5091; Region: intergenic
    Flanking Genome Sequence: GT14024 - 5-prime edge 
    CCTACTTTCT CCCTGGTATT TACGCATTTA TATATGAAGC TCTTTTAATA 
    ATATTTCGAT TATGTTGTCT CAGTCTGGTG GTTAGATGTA GGTTGATTTA 
    TTATCTATAC CCGAGTTCAA GTCCTACCAC CACCAAAAGA AGTTTTTTTT 
    CCTTTTCTCT TCTTTTCAAC CTGACATCTT CTTCTTCACC AAACTCTCTT 
    TTCTCTATTC GCTGTAATTT TCTTAAAGCT TTTGATGTTG TTTTGTTCAC 
    AATTGCTTAA TCTCCCTTTT TCACCGTAAT TTGTAGTTGA CAAACTTTTT 
    AATCAGTAAA CAGAAGAATC AAAAGTTTCA AAATCTATCT TTCATCTCAC 
    TCGA

AT3G55730.1

Model type
Protein coding
Short Description
myb domain protein 109
Curator Summary
putative transcription factor MYB109 (MYB109) mRNA,
Computational Description
myb domain protein 109 (MYB109); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 25 (TAIR:AT2G39880.1); Has 8907 Blast hits to 7929 proteins in 513 species: Archae - 0; Bacteria - 2; Metazoa - 870; Fungi - 593; Plants - 5452; Viruses - 6; Other Eukaryotes - 1984 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55734.1

Model type
miRNA
Short Description
MIR393B; miRNA
Curator Summary
Encodes a microRNA that targets several TIR1/AFB family members and one bHLH family member. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UCCAAAGGGAUCGCAUUGAUCC. Targets are: F-box proteins and bHLH transcription factor. Specifically cleaves AFB3 transcripts, controlling AFB3 mRNA accumulation in roots in response to nitrate exposure.
Link
InterPro Scan - TAIR

AT4G03935.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT4G03940.1

Model type
Protein coding
Computational Description
unknown protein; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR