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GT14250

CSHL Arabidopsis genetrap mutant lines

Original: GT14250

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14250

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1363712 [Map]; Strand: c
      • AT2G04090.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT14250 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAT 
    AAGGAGCTCA AACAACGACC ATTCTATGCT GCATATAGAA ACCAAAAACA 
    AATCAAGCCA AGAAAGAAAA GAATGCACCA ACGATGAAGA AGATGAATGT 
    TTTTACGTTG TCATCGCTGC TGATGGTATC CCATACTGAA AAAACTGCTT 
    GACACTCAAC ACGAAATCAT CGGATACAAA GCCGCGAGTC TTCTCGCAAG 
    CGCTTGAAAA TCTCACATAT AAAGCAAGAA TCAAGACATT AAACCAGTAA 
    GACAAACCAA TAGCCAAGGC GGCTCCATTG CTTCCAAGAC CAAACGCGTA 
    AACCAGAATC AAACAAACTG GTATATGGAA CAAAAGGGTG GTTATGGCAC 
    AGTAGAGAAG AGGAAGAACC AAACCCTGAG TCTGGAGAAA CCGAGTCAAA 
    GGTTGTTGCA CCGCTTGAGC TAACAATGCC GGTATAAGAC AAACTGCGTA 
    AGAACCAGCT ACCTTGGAGA TGTCAGGATC TTGTCCGAAT GAAATCAAGA 
    GTTTGTCCAT GTAAAACCAG AGAATCGATA TGAGAACAAC TATGGGTACG 
    TTTGAGACTA TTGCAGAGTA CGTATAAGTT CCGATTTTAG TGTATTGTTT 
    TGCTCCATAA GCTTGGCCAC ATAGAGTTTC AAGTGCACCC ACTAAACCAT 
    ACTGCAAAAA TTTCCAAGAC TTGTTAAGTT TCGCTTGGAT CTTGAACGTG 
    GTTTAAACAG AGGATAAACT AATTACCATG ATGCCGAAGC CGGAGACGTT 
    TGCGAAAGCA GTGGCAAGAG CGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1363637 [Map]; Strand: c
      • AT2G04090.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT14250 - 5-prime edge 
    CCTACTTTAT CCCTGCTCCT TATCTTATCC TCAGGACTCC TCCCAAACCC 
    GAAACTCGAG ACCTCTGTTC TATCGATTTG GTAATCTATC TTTCTCTCTG 
    GATCTCTGTC TCCCTTTTTA CATATGTTTC TTGTATCAGG AGGGCTTGTC 
    TTAAATACAT ATAGGTCTAG TGAGTAAATG TTGATTAATA AAATTAGATA 
    TAGCTTGTCT TTACTGATGC AATCTTTTTG GTTGTTGTTG TTGTTGTTGT 
    TGTTGTTTTG TTGATGATAG TCTTACAACA TCATCTCTCC ACTGCGTCAT 
    TCCAATGGGT ATCGGGGCTG CTGGAAGGTA TGATTCCGAG AAAACCGACT 
    AAATATTTGT TTGGGAATTT TCAGACTAGT CACAATGTTT ACTTTGGCAG 
    CACACGGATT TCAAACGAAT TGGGAGCGGG AAATCCGGAG GTTGCTAGGC 
    TGGCAGTGTT TGCCGGTATA TTCCTTTGGT TCCTAGAGGC TACCATTTGT 
    ATCACACTTC TGTTCACTTG CAAAAATATT TTTGGCTACG CGTTCAGCAA 
    TAGCAAAGAA GTTGTGGACT ATGTCACGGA GCTATCTTCG CTGCTTTGT

AT2G04090.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04100.1); Has 9714 Blast hits to 9643 proteins in 1968 species: Archae - 172; Bacteria - 6792; Metazoa - 143; Fungi - 326; Plants - 1316; Viruses - 0; Other Eukaryotes - 965 (source: NCBI BLink).
Link
InterPro Scan - TAIR