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GT14269

CSHL Arabidopsis genetrap mutant lines

Original: GT14269

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14269

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9708849 [Map]; Strand: c
      • AT4G17380.1 - [+] show detail - MUTS-like protein 4
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT14269 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    ATGATATGAT TTGTGTTCTC TTTGGGTATC GATTTTGCGA CGGCGATTTC 
    TGGGATCGAT ATCGTAGCTT CAAAATCTTG TTTCTCGCTT GATATTTCGA 
    TTGTGATGTT GGATTCGATT TTGGATTTCT CTGTTCAGGT TGGAATGGCT 
    GCTTTTGACC TAAGATCGGC TTCACTGCAT CTATCTCAGT ATATAGAGAC 
    AAGCAGCTCA TACCAAAACA CGAAGACGCT GTTGCGTTTC TATGATCCTT 
    CTGTGATAAT TGTTCCTCCC AACAAATTGG CAGCCGATGG CATGGTTGGG 
    GTATCGGAAC TGGTGGATAG ATGTTATAGC ACCGTTAGGA AGGTGAAATT 
    TTCTGTGCCA TGGCCCATGG ATAGTATTTC TGCACAAATT GGGAAAATTG 
    AATGTATTTG TCTATAGCTA TAGCAGAATC TATTGACTGT TACTATCAAT 
    TCCCTTCTTG CAGGTTGTGT TTGCCCGTGG CTGTTTTGAT GACACCAAGG 
    TTGATACAAG AACTTCTTAT TGTAGAAACA TCCATTGATC CCTGTAGTCA 
    TGTGTTTCTA AATGGATATG CATTTTTGGT TATATGTTTC AGGGTTGCTG 
    TGCTAATACA AAACTTGGCA GC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9708794 [Map]; Strand: c
      • AT4G17380.1 - [+] show detail - MUTS-like protein 4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14269 - 5-prime edge 
    CTTTCTCCCT GCATATCATA ATCCTGCCAA ATCCGAGCAA TGGAGAAGCC 
    GTACTTACCT CTTTGGCTCT GTTCTCAATT AGGCCGGCGA CGAAACTCGA 
    TCTCTCTCCT CCGTCGTCTT CCATTTTCGC TCCACAGATC AGAATTTGAA 
    AATTGAGTGA AAGGTACACG AGTTCCGAAA ATGAAGGCAA AAGCGCGCCA 
    CTGTGAATTC TATCAATCGG TTTGCACTCC ACCACGCCGA TTTTAATTTC 
    GTAAACCGGC TTCAATGACC AAACTGTGCT GAGGGTTTCC GGTTCAATTT 
    ACTTGGTTTG TGAAATCCAG CCAAAATCAA ACATATACAT TTGTTGGATT 
    AATTCTTTGT TTCCGATTTA ATTAATTCAA TTTTCAATCG ACATTTTTAT 
    ATTTTATATT TGTCCAAAGA ACATTAAAAA CAAAAAATTT AGAGAATTAC 
    CAAATTAAAA TTTGGTTTGG TTCGGTTATT TTGGTTCAAC AGAGTTTGAA 
    TCTGTTTCTA TTATCCGGAT TGTAGAGAAA TTGAGGGGCT GTTTGATCCA 
    GTTCCATTGC CAAGCAGT

AT4G17380.1

Model type
Protein coding
Short Description
MUTS-like protein 4
Curator Summary
Encodes the Arabidopsis homolog of MSH4, a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I, preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination.
Computational Description
MUTS-like protein 4 (MSH4); FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, synapsis, meiotic prophase I; LOCATED IN: condensed nuclear chromosome; EXPRESSED IN: flower, sporocyte; EXPRESSED DURING: petal differentiation and expansion stage, IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS, core (InterPro:IPR007696); BEST Arabidopsis thaliana protein match is: MUTS homolog 2 (TAIR:AT3G18524.1); Has 13303 Blast hits to 13154 proteins in 2712 species: Archae - 169; Bacteria - 9120; Metazoa - 661; Fungi - 837; Plants - 451; Viruses - 3; Other Eukaryotes - 2062 (source: NCBI BLink).
Link
InterPro Scan - TAIR