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GT14271

CSHL Arabidopsis genetrap mutant lines

Original: GT14271

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14271

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22550904 [Map]; Strand: w
      • AT3G60961.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G60965.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT14271 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATTT 
    GGGATGACAT TGCAGACATC GACAAAGGAT TCACTTGCTG TTGTGGGAAC 
    TCTAGTTGTT GTTCCATGAA GAAATATAAG AAGAAACAAG ATGGGCTTCA 
    TCTCCCTCGA CTATTGATGG GGCTTGATAA TCAAAGATTT GGCACAACAC 
    GATCAAATCT TCTTTCTCGT CTCCATGATC TGAACCTAGA GAGTGTTTAT 
    TCGCAAATAA TTCAAGAAGA AAGACACATT CAAGCTACTC GTGAACCACA 
    AGAAAAGGGA GGAGCTGTTG GGTTTTCAGC ATCAGCTGCA GGTGCTTTCA 
    AATCACAATC ATCGACTTGC TCTCACTGCG GGAAAACAGG TCACGAAAAG 
    AGCCAATGTT ACAAAATCGT TGGTTATCCT GAAAGGTGGA ATGAACCATC 
    ATCTTCAACT GCGGGGAGAG GTAATTCTGG TCGAGGTCGT GGTTCTTCAA 
    GGGGAAGAGG ACGCGGGCGT GGTGGTCCAG TGTCCGCTTC ACATG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22550955 [Map]; Strand: w
      • AT3G60961.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT3G60965.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT14271 - 5-prime edge 
    CCATCCTACT TTCTCCCTGA TCCCAAGAAT CTTCAATCGT CCATAGTATT 
    CTTCTACGGT TTGTCCGTCT TGTTTACACC CGTTAAGATC AGCATGGAGT 
    TGATGTTCTC TCGTGCCGTC GCTAACAGAG AAACGATTTT TGAGACTAGC 
    CCACATCTCA GAAACGTCCT CCACAAGTGA AATCGAAGAT CTTAGTTTTG 
    GTTCCACGCT GCTATAGATC CATCCTATAA TCATCGAGTT CACCATGTCC 
    CATCGTTCTG CATCATCTCC TTCACCATCT GGTCGCTTAA GGCATCCGTT 
    GAGAAACCCT ACCTTACGCT TGGTTCGCAA GGAATTCATC TCACTCGA

AT3G60961.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G60180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60965.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 8.8e-146 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)
Link
InterPro Scan - TAIR