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GT14396

CSHL Arabidopsis genetrap mutant lines

Original: GT14396

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14396

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15684015 [Map]; Strand: w
      • AT4G32500.1 - [+] show detail - K+ transporter 5
        Distance: 0; Region: intron9 (CDS)
    Flanking Genome Sequence: GT14396 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CAGGGATGAA 
    AGTAGGATGG GAAAATCCCG TACCCGACCG GATCGTATCG GTTACTTTAG
    GACTTGTATC CCGATCCATC TCCTGACCCA GGTATAAATC GTCTCCTCTG
    GCTGCCGGAA TATTAAACTG AGAGGCAAAT CCCTTTTCCC CTGAACCTAC
    ATGACCTATG GCTCAGCCAA AATGCCTTTC ATCACTGGAT CTGTTGAGTC
    TTTCAGATGC TGCATTAGAC CAAAACATAT CCCAGATGAG AAAAAATAGT
    CAAACCAGCT AAAATGTTGT AGCCACTATG GATTTATACG GAAATAGCTT
    CGGACTAACC TGAACAAGAT TATTCATGAT TATTGCCCCA TCACCAACGT
    TTGCCTGAAC AAGATTTAAG AATGCTGTAC GGTTCAGACG AAACAATTGA
    CTCAATCGTT TGGTTCGAAC TGTGAACAAC TGTGGCCTGT AACATAGAAC
    CCCAACTTCA CCAAAAACAT GGCCGGTCTG TGCTTCACCA ACTACCTGCA
    ATGAATACAC AACTCACAAC TTAAAAACCG TCACAAAAGA GAAATAAAAA
    TGCGGATTTT ACCTGATCCA CTCCATTCAC ACGCGCAATG ATGTCCTGTC
    ATATAGTAGA AATGTCAACT AATTTGAAAA A

AT4G32500.1

Model type
Protein coding
Short Description
K+ transporter 5
Curator Summary
Encodes AKT5, a member of the Shaker family potassium ion (K+) channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).
Computational Description
K+ transporter 5 (KT5); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding; INVOLVED IN: potassium ion transport, N-terminal protein myristoylation, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Shaker pollen inward K+ channel (TAIR:AT2G25600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR