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GT14444

CSHL Arabidopsis genetrap mutant lines

Original: GT14444

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14444

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5787348 [Map]; Strand: w
      • AT1G16916.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -236; Region: promoter
      • AT1G16920.1 - [+] show detail - RAB GTPase homolog A1B
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT14444 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAT 
    TTCAAGAATT GTTGGTGAAC CAGGCTCAAT ATGCATCAGT TAAGCAGAGG 
    AATCTGGATC TAAAATGCCG ACGTTCATCT TCGATAGTTG GATCGTCGCT 
    CTCCTTGTCC TCCAATTATG ATTCTAATTT CCTCTGTCTT TGTAATCTTC 
    AAAATCCAAA ACCACAACTT CAGAACCGGG TCGGGTTGCG TTATGTTGTC 
    GGGTTTAGGT CTCATTTTGT CACTAAACTG CAAACGACGC CGTTCCTTTA 
    GAGAAGAAGA AGAAGATAGG AGCGAGCGAG CGAGCGAGCG ATTAGAAGAA 
    GAAATGATGG AGGAAGGACC ACCAGCTCCA AAGATGCTTC GAATGGTCTA 
    CTTCGTCGGC GCCGGATGTA AGTTCGCTTT ATGCTGCTTC ATATTTTTTT 
    CTATTTTGAT CTCGATTGAA TCCAACATTC CAATAAAATA TAAAATATTT 
    CGCAGTTCTA TGTACATTCG CGATCAATAA GTGGCGTGAG ATGGAGAGAA 
    ACTCGCTTCT GAAACAGGAG CAGGAGAAGA ATCAACAAGG AGATGTTGGT 
    TTATTGCCTA GAGATTCGGT TCAGAAAGCT ATGAAATGAT GATCACTCTC 
    TTCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11446492 [Map]; Strand: c
      • AT1G31880.1 - [+] show detail - DZC (Disease resistance/zinc finger/chromosome condensation-like region) doma...
        Distance: 0; Region: intron2 (5UTR)
    Flanking Genome Sequence: GT14444 - 3-prime edge 
    AAAAAAGAAG AAGTCGTTTT CTGAGGTGAG AATAATAATG GGGTTTGTAT 
    CAGTTTGCCT TTGCTTTTGA TATCAAAACA GAGTTTTTTC GTGATTCGTG 
    ATTGTTTTTG CGATTTTATT CTCTTTTTAC TTTGGATATA GTTTTAGTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5787394 [Map]; Strand: w
      • AT1G16916.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -282; Region: promoter
      • AT1G16920.1 - [+] show detail - RAB GTPase homolog A1B
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT14444 - 5-prime edge 
    GATTTCCATC CTACTTTCTC CCTGCTTGAA TAAAGTAAAT AAACATTATG 
    TAGTGTATGG TCTAAAACTC ATACAAATGT CGATAGTGTT ACAAAACAAG 
    GACATAATCA AACAATGGAC CATGGGGGTT ATAATTCTCT CTCAACAGTG 
    AAAACAAAAA AAGGCTTCAA TTTGAGCAGC ACCCGAGTTT CTTCATCTCA 
    CTCGAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5787397 [Map]; Strand: w
      • AT1G16916.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -285; Region: promoter
      • AT1G16920.1 - [+] show detail - RAB GTPase homolog A1B
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT14444 - 5-prime edge 
    TCCATCCTAC TTTATCCCTG CTTGAATAAA GTTAAATAAA CATTATGTAG 
    TGTATGGTCT AAAACTCATA CAAATGTCGC ATAGTGTTAC AAAACAAGGA 
    CATAATCAAA CAATGGACCA TGGTGGGTTA TAATTCTCTC TCAAAAGTGA 
    AAACAAAAAA AGGCTTCCAT TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5787411 [Map]; Strand: w
      • AT1G16916.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -299; Region: promoter
      • AT1G16920.1 - [+] show detail - RAB GTPase homolog A1B
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT14444 - 5-prime edge 
    TCCTGCTTGA AATAAAGTTA AATAAACATT ATGTAGTGTA TGGTCTAAAA 
    CTCATACAAA TGTCGATAGT GTTACAAAAC AAGGACATAA TCAAACAATG 
    GACCATGGGG GTTATAATTC TCTCTCAACA GTGAAAACAA AAAAAGGCTT 
    CAATTTGAGC AGCACCCGAG TTTCTTCATC TCACTCGACC AANNNNNNAC 
    TTCGATTTTC TCACCTTTCG GGACAGAGGC GTTCCCATCT TCACCAGCTT 
    CCACTTGCTT CTTGCTTGTG ATGCGATAAA TTTGTGTCAA CACCTCTGCA 
    AATGCGTCCT CCACATTGGT AGCTTCAAGG GCAGATGTTT CCATGAAGCA 
    GAGCGATTCT TGTTCCGCAT AGGACTTCCC GTCTTCTGTA GGAACAGCTA 
    GCAAGTGGCG GAGATCAGAT TTGTTACCAA CCAGCATCAC TACAATGTTT 
    GGATCTGTGT GGTTCTTGAG CTCCTTTAAC CACCGATCTA CGTTCTCAAA 
    TGTTGCACGG CGAGTTACAT CATATACTAG GAGTGCACCC ACGGCTCCAC 
    GGTAATATGC ACTAGTGATG GCACGGTACC TGAGACCAGA AGCAAAAGTG 
    AGTCTTCAAA TTGTGGCGAG AATC

AT1G16916.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16920.1

Model type
Protein coding
Short Description
RAB GTPase homolog A1B
Curator Summary
small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking.
Computational Description
RAB GTPase homolog A1B (RABA1b); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: trans-Golgi network, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1); Has 28198 Blast hits to 28143 proteins in 766 species: Archae - 30; Bacteria - 158; Metazoa - 14550; Fungi - 4232; Plants - 3316; Viruses - 20; Other Eukaryotes - 5892 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G31880.1

Model type
Protein coding
Short Description
DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein
Curator Summary
Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. BRX encodes a key regulator of cell proliferation and elongation in the root, which has been implicated in the brassinosteroid (BR) pathway as well as regulation of auxin-responsive gene expression. Also involved in cytokinin-mediated inhibition of lateral root initiation. A loss-of-function allele, named brx-2 in Rodrigues et al. (2009) Plant Physiol. but changed to brx-3 to resolve nomenclature conflict (Li et al. Planta 2009:229(3):593-603), shows enhanced response to ABA-mediated inhibition of root growth.
Computational Description
BREVIS RADIX (BRX); CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: BREVIS RADIX-like 1 (TAIR:AT2G35600.1); Has 707 Blast hits to 407 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 705; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR