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GT14512

CSHL Arabidopsis genetrap mutant lines

Original: GT14512

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14512

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9246862 [Map]; Strand: w
      • AT5G26340.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14512 - 3-prime edge 
    ATGAAACGGT AGAGGTTTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    CCGGTAAGAA TATTAACATC CCTTAGTTAT TTTTCTATAT GTATAATACA 
    ATCCTTTTAT CTTATATTAT ACAAAACGTA GAAGAAGTTT TTATTTTAAA 
    GATACATAAG TTTTTGTTAG TGCAAGTTTT CTCAAAAAAC GATTTTAAAT 
    AGGACTTGCT CATGTTTTCA ACTACCGCCA ATAACTTCTT TGGTAGAACT 
    ATTTCACCTA ATACCTAACT TCTTTGGTAA TCAAAATGAA ATTTCAGTAA 
    CTAGCTCGAT GTTAATTAAT ATTGGTTAAA GTAAGAAAAT AATCAAAAAA 
    AATCTTAGCT TACAAAAGTT TGGCAGCTAA AGATCTAGAC CGTCCTTGTT 
    TTAGTTAGTA TATTGACAAA AGTAGTGTCA TATAGGTTTT AGTTCTTCTT 
    TTTGTTATTT TCTTACAACA CACATGCTCG ATGTTGAATT TGAACATGGG 
    CTACATCAAC ATGAATAAAT TAATAAATTT ATGAGTATAA TATCCTATAG 
    GGTTTAACGG TAAAAATAGT AACAACAAAA ATAATTTTCC ATCATTGAAA 
    TGGCTATACG CAGGCGGAGT GACATCGATG CCGGACTTTC TCGAAAAGTT 
    TTTTCCCGTG GTTTATCGGA TAGTAGTAGC TGGCGCCGAC AAAGACAGCA 
    ACTACTGCAA ATACGACAAC CAAGGACTAC AACTTTTCAC ATCATCTTTA 
    TACTTAGCCG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 362219 [Map]; Strand: c
      • AT2G01820.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -1538; Region: intergenic
      • AT2G01830.2 - [+] show detail - CHASE domain containing histidine kinase protein
        Distance: 764; Region: intergenic
    Flanking Genome Sequence: GT14512 - 5-prime edge 
    CCTACTTTAT CCCTGCAGAA AGTGGACTAG TTGTTGTTGT CACGTAATCT 
    TTCTACGTAC ACAAGTGTTC GATCTACATT TCGTGCGAGT TTATAGTATA 
    TGGTTGGTGC GTATAATACA CCAATCTTTA GCTACTTTTA CTATTTTTCT 
    ATAAGATTAA CAACAACAAT ATACATGTCC CAATTTCTAC ATATCGTACT 
    ATAACTATTT TTAAAATAGT ATAGTTATAA TATTTATTAC TAGGGAATAA 
    AAACAGACAT TCAATACCAT AAGAAGAAGA ATAGTTCTAG GTTAGAGTGA 
    AACTGGTAAG TAATAATAAT AACTCTCCAA CCTAACAAAC ATTAAAAATT 
    GTGGTAAACG GCGTAAGATA ACGACCGTTA AAAAATCAGC CGAATGAAGA 
    TTAATGCGTG GCTAATATGC TCCGGATTTC ACGGCGTCTG TCTTTTACAG 
    TTAAAAACTT TTTTGTCGGG ACTGCAAAAA AATCACATTT ATCTTGTTTG 
    GGCAAAATTA GCCATGAGAA GATTAAGACC ATGCAATGCA AAGTACCCAT 
    TAATCTTTTA ATTTTTTTTA TCCAAAGTAT ATAAT

AT2G01820.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: pollen development; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: transmembrane kinase 1 (TAIR:AT1G66150.1); Has 179395 Blast hits to 141441 proteins in 4928 species: Archae - 173; Bacteria - 19044; Metazoa - 57542; Fungi - 11766; Plants - 68071; Viruses - 436; Other Eukaryotes - 22363 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01830.2

Model type
Protein coding
Short Description
CHASE domain containing histidine kinase protein
Curator Summary
Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane
Computational Description
WOODEN LEG (WOL); FUNCTIONS IN: osmosensor activity, cytokine binding, cytokinin receptor activity, protein histidine kinase activity, phosphoprotein phosphatase activity; INVOLVED IN: in 7 processes; LOCATED IN: membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 2 (TAIR:AT5G35750.1); Has 134660 Blast hits to 108037 proteins in 2975 species: Archae - 759; Bacteria - 119664; Metazoa - 32; Fungi - 2267; Plants - 2388; Viruses - 27; Other Eukaryotes - 9523 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G26340.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Curator Summary
Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.
Computational Description
MSS1; FUNCTIONS IN: carbohydrate transmembrane transporter activity, high-affinity hydrogen:glucose symporter activity, sugar:hydrogen symporter activity, hexose:hydrogen symporter activity; INVOLVED IN: response to salt stress, apoptosis, phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 7 (TAIR:AT4G02050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR