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GT14595

CSHL Arabidopsis genetrap mutant lines

Original: GT14595

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14595

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28561105 [Map]; Strand: w
      • AT1G76120.1 - [+] show detail - Pseudouridine synthase family protein
        Distance: -632; Region: promoter
      • AT1G76120.2 - [+] show detail - Pseudouridine synthase family protein
        Distance: -669; Region: promoter
      • AT1G76130.1 - [+] show detail - alpha-amylase-like 2
        Distance: -176; Region: promoter
    Flanking Genome Sequence: GT14595 - 5-prime edge 
    ACTTTCTCCC TGCTCTTAAT GAATACCGTA GAATCGAATC GACACTTTGT 
    GTTTGTGGGT ATAGTCCAAT TTGCTCTTTT AATTCTTCTT CTTCATTGTA 
    ACATTTATAA AAGGTTTGTT TTTTGTGTGG CCGAAAGTTG TTTGACATTT 
    GATTCTGATT CGTTTGGGAT CAGAAACTGT TTAATCACTT CACGTTCTCT 
    CTTCGGCTCT ATATATATAT GTAGGATTGT TTCTTTAAGG GACTTGTGTG 
    ATTTAGCTTC TTCGTTTCCT TGGTATTTGA TCTTCTTTTA TGTGTGTGAT 
    CTTGTTAAAC AGAATTTTGG TTAGCCTATA ATCAATCTCA AATTGGAAAC 
    AGAATTTTGT TTTTGTTTCA TTTATCTGCC AGGAAACAAA TG

AT1G76120.1

Model type
Protein coding
Short Description
Pseudouridine synthase family protein
Computational Description
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G20370.1); Has 3359 Blast hits to 3090 proteins in 1171 species: Archae - 124; Bacteria - 1897; Metazoa - 335; Fungi - 288; Plants - 173; Viruses - 0; Other Eukaryotes - 542 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76120.2

Model type
Protein coding
Short Description
Pseudouridine synthase family protein
Computational Description
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G20370.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76130.1

Model type
Protein coding
Short Description
alpha-amylase-like 2
Curator Summary
alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis.
Computational Description
alpha-amylase-like 2 (AMY2); FUNCTIONS IN: cation binding, catalytic activity, alpha-amylase activity, calcium ion binding; INVOLVED IN: carbohydrate metabolic process, glycogen catabolic process; LOCATED IN: extracellular region; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 13 (InterPro:IPR006046), Alpha-amylase, plant (InterPro:IPR013775), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047), Alpha-amylase, C-terminal beta-sheet (InterPro:IPR012850); BEST Arabidopsis thaliana protein match is: alpha-amylase-like 3 (TAIR:AT1G69830.1); Has 2455 Blast hits to 2450 proteins in 882 species: Archae - 39; Bacteria - 1348; Metazoa - 171; Fungi - 337; Plants - 494; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Link
InterPro Scan - TAIR