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GT14722

CSHL Arabidopsis genetrap mutant lines

Original: GT14722

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14722

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2015941 [Map]; Strand: c
      • AT3G06510.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -389; Region: promoter
      • AT3G06510.2 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -444; Region: promoter
    Flanking Genome Sequence: GT14722 - 3-prime edge 
    AAGACATTAG ATTTGAAGTG GCTGAGGAAG AAGATAAGAA AATCTAAGTG 
    GACCACTCAC CAGAATACAC ACATACTATA CTAGTAGATT AATAAGACAA 
    AATCTTTGGA CAACAATCAT AAATCATATC TACAACCACA AATTCAAAAT 
    AATCTACAGT AAATGTAAAA ATAAAAATCT CGAAAGAAAC AGTCAACCAC 
    AAATTACATA TCAGGTGTCA AGTTACTTGA AATCAAACAT TAATCAAATT 
    GGATATTAAC TTTCAATAAA TTACTATTAG TGTATTTGCT AAATAGAGAA 
    GCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 325690 [Map]; Strand: w
      • AT4G00755.2 - [+] show detail - F-box family protein
        Distance: 0; Region: exon3 (CDS)
      • AT4G00755.1 - [+] show detail - F-box family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT14722 - 5-prime edge 
    CTTTCTCCCT GTGGATACAA GGTTACTTGA AAAAGAGCAC CGGGCTTTTG 
    CCTTGTTGGC TAGAGGGTGC ATGTCTTCAC CTATTGAAAG CTGTATAGCT 
    GATGCCATTA GAGCTTCCAG TACTGATAAT TACCCAGTAG AAAGCATCTT 
    AAACACACTC GAGAAGAGAG ATCGGATTGG TCGAACCCCT TCTTATTGGT 
    CGAGTACTGG GCAACACAAA ACTACGGTGC CCGAATCACT TCTTTACAAG 
    TTGATTGGTG ATTTGTGTCT CATTACTGAA GTCAGCATCC ATCCTTTCCA 
    AGGTACCAAT GCAATCCTTG TGTTAATTTT TTTGTTTTTT TTTGCGTCTT 
    TAACTGAGTT TTATTGCTTA CAGTTTTCCA TTTTCTGTAG CTTATTTTCA 
    GCGCGGTCAT CCGATATACT CTTCACATTA TGTTCGTTTC CGGTTGGGTC 
    ACGAAAAGGA CAATTCACCT CACTACAACA ATTCACAGGA TAAAAAAGGT 
    GAGCCAGGAA AGAGTTCAAT TGAAAGCAAC

AT3G06510.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Curator Summary
Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing
Computational Description
SENSITIVE TO FREEZING 2 (SFR2); FUNCTIONS IN: beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to freezing; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 27 (TAIR:AT3G60120.1); Has 11582 Blast hits to 10595 proteins in 1458 species: Archae - 144; Bacteria - 8179; Metazoa - 842; Fungi - 193; Plants - 1310; Viruses - 0; Other Eukaryotes - 914 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06510.2

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Curator Summary
Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing
Computational Description
SENSITIVE TO FREEZING 2 (SFR2); FUNCTIONS IN: beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to freezing; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 27 (TAIR:AT3G60120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00755.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 80 Blast hits to 80 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 11; Plants - 57; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00755.2

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 80 Blast hits to 80 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 11; Plants - 57; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR