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GT14723

CSHL Arabidopsis genetrap mutant lines

Original: GT14723

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14723

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4840201 [Map]; Strand: w
      • AT1G14140.1 - [+] show detail - Mitochondrial substrate carrier family protein
        Distance: -568; Region: promoter
      • AT1G14150.1 - [+] show detail - PsbQ-like 2
        Distance: 0; Region: exon1 (CDS)
      • AT1G14150.2 - [+] show detail - PsbQ-like 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14723 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC ATGTGGTCCA 
    ACATCTCCCT CATGTCTCTT AATCCTTCAG CCGTCTGTTT TATACGCGCC 
    GCCGCATCCT CAGGTGATAG TCCCGGCATA AAATATTTCT CCTTTATGAA 
    TGACCTTGTC CCCCATTTCT CCTGTGCTAA TGCTGATGAC GTAGCACCGC 
    CGATGACCGT GAATGTTATT AGTGAAGTCA AGGTTCTCCG GCGGGTGAAG 
    ATGTCTTGTT GGGGTTCTCC GGTGCAACAT ACGACGGAGA ACGGTTGGTT 
    TACACGGCGA TGATAAATTT TCCGGAGGAG ATACGGTGGC GGAGTGTTGG 
    TGGTGGTGAA GGAGCTCATT TGATTTTTGT TTTTGTTTTT CTTAAGGATA 
    TGAAATGGGA GGAGCTCAAA ACTATAATGT CTACTCGGTC TTTCATGTTT 
    TGCCACGTCG GCTGTTATCT CTAAAGTTTT GTATTTTAGA ATTTGTGAAC 
    ATGGGCCCAT AAGACTTTAA AGCCCAATAT TATGGAAACG ACGTCTCAAA 
    TACACTCTGA TGACCGAAAC GATGTCGTTG ACTACGAAAT AGAATCAAGT 
    TGTGTTCTCT GTGATGGACA TTGTGTTAGT GGTAATCAAA TCCGGTGAAA 
    ATGGAGCGGA GCCGAGTGAC CAGAGAAGCA CCGACCGGAA CCAGGATCCT 
    GCTTGCTTCA CTCTCTGCGA TGGTTGCAGA GCAGTTACGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19686160 [Map]; Strand: w
      • AT2G48130.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: -167; Region: promoter
      • AT2G48140.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: -249; Region: promoter
      • AT2G48140.2 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: -249; Region: promoter
    Flanking Genome Sequence: GT14723 - 5-prime edge 
    GGTTTATATG GCTTTTATTT ATCAAACATA TCTATGTTCT AGATGCATCC 
    CAATATATAC AACGCCACGT AGACATGAAC CAGTATACTT TTTCAGAACT 
    AATTAAAGAT TGTAATTACT TAAGTTACAA AATTACTAGG AGTATACCAA 
    ACTCAGCTAC TTTCTCTTTT TATTTGGTTT CTCTTTGTTA ATTAATGAAA 
    TAAAAAGAAA AATTGTGTGT TGATAAGAGA TTGAGAGAAA GGATATTAGT 
    TGGAAGTTGT TGAACTCCAA TGCACCCATT TTATCATATA TAAAACTGAA 
    TAATTGTATA TCTATAAAGC ATCGTCACCG GAAGATTAAG CAGGCCAATT 
    AAAATGGAAG GCTTAACATT GATAGTAGTG ATGATGTCAA GCTTTATGTT 
    GGGAGGGCAA GGTCAGCAGA TAAGCACGCC ATGCACCTCC TCCATGATCT 
    CTACCTTCAC TCCATGTCTC AACTTCATCA CCGGAAGCAG CGGCGGTTCC 
    GTCACTCCCA CCGCCGGCTG CTGCGACTCC TTGAAGACGT TGACCAACAC 
    TGGCATGGGC TGTGCTTGCC TCATCCTCAC TGCTAACGTC CCGCTGCCTA 
    CTGGCTTCAT CAATCGGACT CTGGCGCTT

AT1G14140.1

Model type
Protein coding
Short Description
Mitochondrial substrate carrier family protein
Computational Description
Mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: uncoupling protein 2 (TAIR:AT5G58970.1); Has 28913 Blast hits to 14062 proteins in 461 species: Archae - 0; Bacteria - 4; Metazoa - 12057; Fungi - 8822; Plants - 5230; Viruses - 3; Other Eukaryotes - 2797 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G14150.1

Model type
Protein coding
Short Description
PsbQ-like 2
Curator Summary
Encodes a subunit of the NAD(P)H dehydrogenase complex located in the chloroplast thylakoid lumen.
Computational Description
PsbQ-like 2 (PQL2); FUNCTIONS IN: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthetic electron transport chain; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: photosystem II subunit Q-2 (TAIR:AT4G05180.1); Has 142 Blast hits to 142 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G14150.2

Model type
Protein coding
Short Description
PsbQ-like 2
Curator Summary
Encodes a subunit of the NAD(P)H dehydrogenase complex located in the chloroplast thylakoid lumen.
Computational Description
PsbQ-like 2 (PQL2); FUNCTIONS IN: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity; INVOLVED IN: photosynthetic electron transport chain; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: PsbQ-like 1 (TAIR:AT3G01440.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48130.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22600.1); Has 1201 Blast hits to 1197 proteins in 63 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 0; Plants - 1190; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48140.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
embryo sac development arrest 4 (EDA4); CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G05450.2); Has 541 Blast hits to 526 proteins in 56 species: Archae - 0; Bacteria - 35; Metazoa - 27; Fungi - 2; Plants - 459; Viruses - 2; Other Eukaryotes - 16 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G48140.2

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
embryo sac development arrest 4 (EDA4); FUNCTIONS IN: lipid binding; INVOLVED IN: megagametogenesis, lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: embryo, hypocotyl, root, flower; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G05450.2).
Link
InterPro Scan - TAIR