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GT14760

CSHL Arabidopsis genetrap mutant lines

Original: GT14760

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14760

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6104306 [Map]; Strand: c
      • AT2G14370.1 - [+] show detail - transposable element gene
        Distance: 7176; Region: intergenic
      • AT2G14378.1 - [+] show detail - Protein of unknown function (DUF1278)
        Distance: 563; Region: intergenic
    Flanking Genome Sequence: GT14760 - 3-prime edge 
    CGACCGTTAC CGACCGTTTT CATCCCTATT CTCAGCACTA ACTTAAAAAG 
    CTATGTGATG GCGAAATATG ACATATTCGC TGGTGTTATT TTTTTATCTA 
    TCATTATAAA ATACGCGATA AATAATATAT CATTTTTATG AGATATCTCA 
    AATGCAAATT ATATCATACA GAATTACATA CCTTAAGTTT TGTGATACTA 
    GGTCAAATGT GGGAGGTGAC AAAATGTTCG ATTGAAACGG TCTATTTTTT 
    TATAAATTGT TTGAAGGAAA CGTTATTTTT TTGTTTGTTT GTCTTATAGA 
    GAAAATGCAA AGTCAAATAA GCATTCCAAT TTGAAGAAAA TACTTTCTAA 
    GTAATCTACA TGCTTCAGCT AATTTAGTGT ATGGAAACTA AGTAAGTTAT 
    TATATCTTTA ATTCCCATAT ATATTCGTAA ACAAAGACAG AATAGAGTAA 
    ACTAATAAAT TACCACAATA TCAATAAATG GGAACAAAAG ATATATAAGG 
    CACTTGGAAC ATATATAGGA GAATTTCCTT TATTCAT

AT2G14370.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 1.2e-116 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR

AT2G14378.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1278)
Curator Summary
Encodes a ECA1 gametogenesis related family protein
Computational Description
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT4G35165.1); Has 173 Blast hits to 163 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR