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GT14816

CSHL Arabidopsis genetrap mutant lines

Original: GT14816

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14816

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30143419 [Map]; Strand: w
      • AT1G80130.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -773; Region: promoter
    Flanking Genome Sequence: GT14816 - 3-prime edge 
    TAGAGGTTTT TACCGACCGT TACCGACCGT TTTCATCCCT AGGTTTACCT 
    GTCTGTCAGA TAACGACCGT CTCAATATCG GATCTTAATT ACATTTATGA 
    ATAACTCGAC TGCGCCTCCG CAAAATAAGA AGAAATTGAA TATCGAACAT 
    TTCAACCTCA GGCATCACAT CCAAGTGATT CCTTATGTTG ATGTAAAAAT 
    GGGATATATA GGACCAATCA GATTCATATA ATAATATTCA TAAATCAGAT 
    TCGTAATGCA GTATTTATCA GCTCCATAAA TGATCCTAGA GAATCTTATG 
    TAAAGTGGAT CATGCACGTA TCTTTATCTT CTCAAACCTT CGAAAGAAAC 
    CCTCAAAACG TTATTATCTA CCGAATACAT TTAATCCATT TAGCGTGCCA 
    AAAGAACAGA GCCCGTAGTT GATAAAAAGC ATGAGAGTGA TGATGAATGT 
    GAAGCACTGA GAGAGATCTC ACCGCTTGCC GTATAACGTC TCCGTCTCCG 
    TCTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30143420 [Map]; Strand: w
      • AT1G80130.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -774; Region: promoter
    Flanking Genome Sequence: GT14816 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGGTTTACC 
    TGTCTGTCAG ATAACGACCG TCTCAATATC GGATCTTAAT TACATTTATG 
    AATAACTCGA CTGCGCCTCC GCAAAATAAG AAGAAATTGA ATATCGAACA 
    TTTCAACCTC AGGCATCACA TCCAAGTGAT TCCTTATGTT GATGTAAAAA 
    TGGGATATAT AGGACCAATC AGATTCATCT CACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30143487 [Map]; Strand: w
      • AT1G80130.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -841; Region: promoter
    Flanking Genome Sequence: GT14816 - 5-prime edge 
    CTTTCTCCGT TTCCCAAAAC GTACGGTGTG GGATTGTGCT TTGATGACTT 
    GCGAAAAGGT CTTCGTTACT GGAATTTGGA ACTTTATGCT TAGTAGGCCC 
    ATATCCTTAT TTTTCTATTC CGGCTGCTCT TTGTAGGCCC ATAACAATTC 
    AGGCCCACAA TTAGTACGCA TGTGGATCCG TGTGCCATTC GACATGCATG 
    ATACATATAG ATGAGATGAC AAACACATCA TCAACTTTTT TTCCTTTCTT 
    AATACACACC AATACACCAT GACTATCAAT GAACACATGC CAAGCCACGA 
    GTAAATGTTT ACCTGATTAC ATATCGAAAG ATTGTATAAT TCCCGACAAT 
    ATCCAATGAA CCACCATCAT GATGCCATCA TTCATGGGTC AGATCATGAA 
    CATCCATGAG AAGCAAGACA CTAGATAAAT AATGTATATA TAGATACTAT 
    TCTTAAGGTT CAAATACTCT ATCTCTACAT CTACATATCC ACTTTACCGG 
    ATAGTATGGT TCACTATCAT CATCATCATC ATGAGCACCA CGAATGTCAA 
    ATAGATAAGG AAGGCAAGGC TTGCAGTTCC GGCATTTTGT CGCACACACG 
    GGAGGCTCTG AACCCATAAC CGATTCTTTC ATTCTTTGTT GATGACCATG 
    TGCCCCTACA TGCATGTACA TTAGTATATA CATATAATCA GAAAGGGATT 
    AATAAAGGGG CAATATTTCA GGGATTTGGA TATGTATATA TAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30143477 [Map]; Strand: w
      • AT1G80130.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -831; Region: promoter
    Flanking Genome Sequence: GT14816 - 5-prime edge 
    TTCCATCCTA CTTTCTCCGT TTACCAAAAC GTACGGTGTG GGATTGTGCT 
    TTGATGACTT GCGAAAAGGT CTTCGTTACT GGAATTTGGA ACTTTATGCT 
    TAGTAGGCCC ATATCCTTAT TTTTCTATTC CGGCTGCTCT TTGTAGGCCC 
    ATAACAATTC AGGCCCACAA TTAGTACGCA TGTGGATCCG TGTGCCATTC 
    GACATGCATG ATACATATAG ATGAGATGAC AAACACATCA TCAACTTTTT 
    TTCCTTTCTT AATACACACC AATACACCAT GACTATCAAT GAACACATGC 
    CAAGCCACGA GTAAATGTTT ACCTGATTAC ATATCGAAAG ATTGTATAAT 
    TCCCGACAAT ATCCAATGAA CCACCATCAT GATGCCATCA TTCATGGGTC 
    AGATCATGAA CATCCATGAG AAGCAAGACA CTAGATAAAT AATGTATATA 
    TAGATACTAT TCTTAAGGTT CAAATACTCT ATCTCTACAT CTACATATCC 
    ACTTTACCGG GAAGGATGGG TCACTATCAT CATCATCCAT C

AT1G80130.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: response to oxidative stress; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G20190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR