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GT14844

CSHL Arabidopsis genetrap mutant lines

Original: GT14844

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14844

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9086375 [Map]; Strand: c
      • AT1G26260.2 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
        Distance: -478; Region: promoter
      • AT1G26260.1 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
        Distance: -729; Region: promoter
      • AT1G26260.3 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
        Distance: -839; Region: promoter
    Flanking Genome Sequence: GT14844 - 3-prime edge
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCGT 
    AAATCGTGAT AAAACATACA ACATTTTTCT AAGCACATAT TAAGTTGATC
    TAATCTAAAA TGATTCTTTT ACTTTCATAG GAGCTAGCTC GACAATTACA
    CGAGTTGTGC TATCTTTGGA TGGGCATGCA TGTAAATTAC TCTTTTAGAA
    TTCCAAAATT TGGACCTATG ACACTACTCA CTAGCCAAAA ATCTCTAAGA
    ATTGAGATTA ATGTCTTCAT TTTTTATTTG AGACGTTAAT TTCATCGGAT
    TTGTTAGGCT TCTTTTGTAT GAAATCCTTA GTTTTGCATT TGACCATTTC
    TCAAAACACC CTAACATTTT TAATGTTCAG ATCATGGCTG TGTTTAATGT
    TTATGTTTAA TGATCATAAG CTCTGTTTTT AATGCAAGCG TGGGTATATG
    AATTCAGGAA CTTTTTTTTT T
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9086319 [Map]; Strand: c
      • AT1G26260.2 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
        Distance: -534; Region: promoter
      • AT1G26260.1 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
        Distance: -785; Region: promoter
      • AT1G26260.3 - [+] show detail - cryptochrome-interacting basic-helix-loop-helix 5
        Distance: -895; Region: promoter
    Flanking Genome Sequence: GT14844 - 5-prime edge
    TCCACTTTCT CCCTGGATTA CCTATCGCCC AATATCAAGC TGTAATCGTT 
    TTTTTTTGAC ACCACTTAAA TTGTTCAACT ATTATGCAAA AGTGAAGGAG
    GGAGCTGCTG GACGGTCCGG TGACCACAAG GGCCGAGGAC ATAATTAGTT
    GGCCTTGGGA CTTTCAATTG CTAAAGACCT AAATAAATAT TTTAAAAATA
    TTCAACCCCC ACCTTTATAC TTTTATCATT TCTTCCAAAA TTTTTGTGTG
    TAACATTGCT CTGAAATTAG TTTATTCTGA CTTTATCATT CATCTCACTC
    GACA

AT1G26260.1

Model type
Protein coding
Short Description
cryptochrome-interacting basic-helix-loop-helix 5
Curator Summary
Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.
Computational Description
cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 2014 Blast hits to 2008 proteins in 104 species: Archae - 0; Bacteria - 3; Metazoa - 32; Fungi - 24; Plants - 1947; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26260.2

Model type
Protein coding
Short Description
cryptochrome-interacting basic-helix-loop-helix 5
Curator Summary
Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.
Computational Description
cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26260.3

Model type
Protein coding
Short Description
cryptochrome-interacting basic-helix-loop-helix 5
Curator Summary
Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.
Computational Description
cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR