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GT14867

CSHL Arabidopsis genetrap mutant lines

Original: GT14867

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14867

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 214463 [Map]; Strand: w
      • AT2G01470.1 - [+] show detail - SEC12P-like 2 protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT14867 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TACGTTGAGC TGGGGAGACA GACACTGAGG ATGGCGAATC AGAGAACAGA 
    GACGAATCAA CCGTCGAATA TGCAGACTTA CGGTGTACCG ATTTACGCCG 
    CCGACTGGAT TCCGGAGGTA GATGTCAGAT CCAAAATCAT AATGGATCCG 
    GAGAAATCTG AAGATGATGA TGAGTCGTCT TCTTCTTCTT CTTCTTCCCG 
    GAGCTGCATC GTTTTGTCCG GCGGAGGCGG AGAGGGACAA AGTGGAATCT 
    CTAATGTCAT ATTAATATGC CGTGTTGATC TAAACACCAA TTCTCTCTCG 
    GAACAACCTG TAAGTAGGAA AGGTTTTATA TTCTGTTCTT ATATGAGTGT 
    ATAGGAGCAG ATCTTATGCA TTTGCAAGGT TTTGTATTTC CTATAACTAG 
    ATCGGATACT TATTTTCAGC TGGGTAGGCT TGTGGTTGGC TCTGATCTGC 
    CTTATCGGAT GGCTGTTCAT CCTCGGGAAG GTGGTCTTAT TTGCGCGTTG 
    CCTAACAGTT GCAAGTGAGT AATTCTCAAT TCGATTTCAA ATGAAAGCAT 
    ATGATCTTGA AGTTTCTGTA TACAAAGTCG TAGTGCATGA GATTTTAGAG 
    AGAAGTTCTG TGAGTTTATG GTTTGGAGTA GAGAGAAATT TACAAGAGAT 
    GTGGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 214517 [Map]; Strand: w
      • AT2G01470.1 - [+] show detail - SEC12P-like 2 protein
        Distance: -45; Region: promoter
    Flanking Genome Sequence: GT14867 - 5-prime edge 
    CTTTCTCCCT GGCTCATGCC AAGTCCCCAC TGATTCGTAA AAATACTAAA 
    TACAAAAAAA AATATTAATG GGCTAACTTA AGGCCCATTA CAGTATTTAT 
    AGGCCCATCA TAATATTTCA TTTATCGCTG AATTCCGGTA AAGTGATAGC 
    GGTTGGACCC GGTTCACGGG ATAGAGACGG GAAAGAGTAC GGCGGTACGG 
    AGGTCAAACT CGGCGAGAAA GAGTACGTAT ACCGGATCCT TTAATTTTTA 
    TAATATTTTC ATTTATCACC CCAATACTAT TGATTTGATC TAAAAACACC 
    CTATAGTTGT GTAAAATTCT TAAATCGATG TGTGGGTGAT TTTTGACGTA 
    GGTATCATCT GTTTCGGGAC GAGGACATCC TTGGTACATT GCACGAGTAA 
    AATGCAAAGG AAGTCTCTGA GTCAGCTAGT GGGTTTCTTG GAGGAATAAT 
    AATTTTTCAG TGACTCGTTT CAATACATGT TGTTGAAATT TGAAAGTTTT 
    GTTATTTCTC ATCATTTTGT TCCTCCTTAA ATTGGGCCCT TTTA

AT2G01470.1

Model type
Protein coding
Short Description
SEC12P-like 2 protein
Curator Summary
Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER.
Computational Description
SEC12P-like 2 protein (STL2P); FUNCTIONS IN: nucleotide binding; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G50550.1); Has 6374 Blast hits to 3814 proteins in 364 species: Archae - 22; Bacteria - 2789; Metazoa - 1016; Fungi - 1422; Plants - 400; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Link
InterPro Scan - TAIR