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GT14868

CSHL Arabidopsis genetrap mutant lines

Original: GT14868

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14868

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2981013 [Map]; Strand: w
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: -143; Region: promoter
    2. Chromosome: 4; Position: 15556246 [Map]; Strand: c
      • AT4G32205.1 - [+] show detail - transposable element gene
        Distance: 87; Region: intergenic
      • AT4G32210.1 - [+] show detail - succinate dehydrogenase 3-2
        Distance: 169; Region: intergenic
    Flanking Genome Sequence: GT14868 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGACTTG 
    GAATAGGAAT CGCAGGAGTT ATAGAGATAA GAGCTCCGGT CCCAAGTCAT 
    TTTCGATTTG GAGGACTCGC ATAGAGTTTT AAATTTTTTA ATTTTTTTAA 
    CAAACGCAAA AATTAGCCTG ATTAAAGTTA TTGATAGAAA TTGCATTAAA 
    AATTAAAACA TCATCACTGC AAATAAAACA ATATTTTAAC TCATCTTTTC 
    CTGAAATTGA AGTTGACAAA TTTCATGAAG AAAACTTGTA GCAAAAAGAG 
    TAACGTAGCA ACAGAACTTT GGTAAACATT TATTACATCA TTCAAAAAAG 
    GTCTGAGAAC AAAGAAAAGC AACAAACATA CCCCCAAAAA AGCCTCGAAT 
    CCAAAGAAAC AGGTGCTAAA TCTTTACCTT TTCAAGACAG AGTTTAACAA 
    ATGTTTTCTT GTCTCCTTAT TAATCATCTC AAAGAAACTC TTACTGGAGA 
    CTTTGGCGGC TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2977709 [Map]; Strand: w
      • AT5G09590.1 - [+] show detail - mitochondrial HSO70 2
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: GT14868 - 5-prime edge 
    TCCTACTTTC TCAATTTCCA CTACGAACAC AGAATCTCCT CTTCTCTATA 
    TAAGTAACAC TTTTGCAATC ACAATCTCTT CGATTCTCTT TGTACGCTCG 
    AGATCTCTCT GGTTCTTCTT TAACAGGGGT CATGAAAGCA CATTCCTGTG 
    ATATATACTA ATTTATGAGC CATCCAAAGC TACCATTGTT TTTGTCAAGT 
    TTTTACTAAA ATGTTGATTG TCTCGTTTCA TTCTCTTGAA GGTGTTCTCA 
    ACTGCAGCCG ATAATCAGAC TCAAGTTGGG ATCAGGGTGC TTCAAGGTGA 
    GCGTGAAATG GCAACAGACA ACAAGCTCTT GGGAGAATTT GATCTAGTTG 
    GCATTCCACC ATCTCCAAGA GGAGTCCCTC AGATCGAAGT GACATTTGAC 
    ATTGATGCCA ATGGCATTGT CACTGTTTCC GCCAAGGACA AGACGACTGG 
    TAAAGTACAA CAGATCACAA TCCGATCCTC TGAGTGTTGC GCCTTCCAAG 
    ACGAGCACCA TCAATTCCAA ATGAGTTGCT ACTGATACAG ATTTAGTTCT 
    TTCAATATAT TCACTTTTGT CAGAAAGAAA ATGAACAAGA AACAAAACCT 
    TGTTCCCTAA CCTTGTTCT

AT4G32205.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1)
Link
InterPro Scan - TAIR

AT4G32210.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-2
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-1.
Computational Description
succinate dehydrogenase 3-2 (SDH3-2); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-1 (TAIR:AT5G09600.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09590.1

Model type
Protein coding
Short Description
mitochondrial HSO70 2
Curator Summary
heat shock protein 70 (Hsc70-5); nuclear
Computational Description
mitochondrial HSO70 2 (MTHSC70-2); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to salt stress, response to virus, response to heat; LOCATED IN: mitochondrion, cell wall, plasma membrane, chloroplast, mitochondrial matrix; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: mitochondrial heat shock protein 70-1 (TAIR:AT4G37910.1); Has 35090 Blast hits to 34955 proteins in 4871 species: Archae - 160; Bacteria - 17405; Metazoa - 3531; Fungi - 1665; Plants - 1246; Viruses - 305; Other Eukaryotes - 10778 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR