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Mutant Lines
GT14881

GT14881

CSHL Arabidopsis genetrap mutant lines

Original: GT14881

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14881

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 23722635 [Map]; Strand: c
  - AT5G58720.1 - [+] show detail - smr (Small MutS Related) domain-containing protein
    Distance: 0; Region: exon1 (CDS)
  - AT5G58720.2 - [+] show detail - smr (Small MutS Related) domain-containing protein
    Distance: 0; Region: exon1 (CDS)
  - AT5G58720.3 - [+] show detail - smr (Small MutS Related) domain-containing protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: GT14881 - 3-prime edge
```
GGTAGAGGGT ATTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCAGA 
GGTAGACGCT GTTTCCTGAC CCGAAGAACC ACTCGCCACC GAACTCGTCG 
ACGGATCATC ACCGCTTTCC ACCAGATCCG ATAAAATCTC AGCGGCTTTG 
TTCATCTCAC TCGA
```
5 prime edge [+] show sequence
1. Chromosome: 5; Position: 23722579 [Map]; Strand: c
  - AT5G58720.1 - [+] show detail - smr (Small MutS Related) domain-containing protein
    Distance: 0; Region: exon1 (CDS)
  - AT5G58720.2 - [+] show detail - smr (Small MutS Related) domain-containing protein
    Distance: 0; Region: exon1 (CDS)
  - AT5G58720.3 - [+] show detail - smr (Small MutS Related) domain-containing protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: GT14881 - 5-prime edge
```
TCCTACTTTC TCCCTGCCTC TGAGTATGGG GCAGGGTCAA GTTCTAGCTG 
TAGCGAAGAT TTGACTAGAG ATAGATGGTT TAAGGGAAGC AAGCAGAGTA 
GAGTTATTGC TGCTACAGGG ATGGTTTCTT CTGTGATTGC GAAGGATTAC 
TTGAAGCCAA ACCCTGTGCG AAAAGAGTTT CCTATGATGG AACGGTCTAA 
AGAGCTCTGT GGGAACGGGA AAAAAGCTGC GGATAGAGAG AAAGCTGAAC 
AGTTCTTAAG TTCAATGCTT GGAGATGATT GCGAGCTTAG CATGGCTGTT 
GTTAGAGATG TTTTGTGTGA GTATTTCT
```

AT5G58720.1

Model type: Protein coding
Short Description: smr (Small MutS Related) domain-containing protein
Computational Description: smr (Small MutS Related) domain-containing protein; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58720.2

Model type: Protein coding
Short Description: smr (Small MutS Related) domain-containing protein
Computational Description: smr (Small MutS Related) domain-containing protein; FUNCTIONS IN: damaged DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58720.3

Model type: Protein coding
Short Description: smr (Small MutS Related) domain-containing protein
Computational Description: smr (Small MutS Related) domain-containing protein; FUNCTIONS IN: damaged DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR