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GT14927

CSHL Arabidopsis genetrap mutant lines

Original: GT14927

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14927

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4121926 [Map]; Strand: c
      • AT3G12920.1 - [+] show detail - SBP (S-ribonuclease binding protein) family protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: GT14927 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTATAA 
    CCTAACCCAC GATTTTTAGC AACAGAGGTC CCTCGTGAAC CCCTTACGAA 
    ATTTAAAGAT CTGACACATA TGTCAAAGAT TCGTGTTCCA TCATCATCAT 
    CACCATCCAA AGAAAAAAAG AATGAACAGT TTTTAACCAA GAAACTTTTG 
    TCTACTATTT ACTTTTTTGG GGGGCATTTA CATTTTACTG GTATTGGTTA 
    GGTCTAAGAG GAAAGATTAA CATGTAGACT AGCGGTCTTT GGAGATTTAC 
    ATATAGGACA AGTGTTGAGT GAAGAGCCAC ACACAGAACA TAGACACATG 
    TGTCTGCACG GAAACAGAAA CACACTTGCT TCTCCTTTCC CACAGCTTCT 
    ACACATACTC ATCCCTACCC TACACATCTT TTTCGTATCC TGCGCCTCTC 
    CCGCTAACTT CCACCGTTCT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16616169 [Map]; Strand: w
      • AT5G41540.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -106; Region: promoter
    Flanking Genome Sequence: GT14927 - 5-prime edge 
    CGGAGCGCTG CATTGACTTT GAAAGGAGTT CTAATGCAGT TATCCCAACA 
    CTAAATAGAT CGAGGAGAAA CTCTCTTATA GATTTGAATG CTGATTGGTT 
    GATTTTTTAA GTCTTCGTAT GATGGAACTT CCTCATCGCC GAGGCCTCCA 
    CTACTCATAA TAAAAAACCG AAACACATTA TCAGATATTC TTTTGCAGGT 
    CACAATGAAA CAGCGATACG ATATTAAAAA AGATGATAGA GAGAGAGAGA 
    GACTTTTCTC TTCTTCTGTT GTTTCTTAGA AAAGCAATCT ATGGGATTCA 
    TGACACAATT GTGAGTGCTT GATATTAATA ACATTATAAA TCTTGCAAAT 
    GGGTTTTCTG AAATATAGCA GACTTAATCA ATTGACTTGG TTATTTATTA 
    TCTCTTTCTA CTAGTATAAC AAAACCTAAT CAGAATGGTG TGTCTTTTCA 
    ATAGTTGCAT AAAATATATT CTTAATGACT AGACAACTAT CCTAACAGTC 
    AAAGAGAGGA TAGACGAGGA GCACCTCAAA TATATCTTTC TTGAGATTTG 
    ACA

AT3G12920.1

Model type
Protein coding
Short Description
SBP (S-ribonuclease binding protein) family protein
Computational Description
SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G79110.2); Has 1634 Blast hits to 1631 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 874; Fungi - 0; Plants - 566; Viruses - 36; Other Eukaryotes - 158 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G41540.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR