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GT14974

CSHL Arabidopsis genetrap mutant lines

Original: GT14974

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14974

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18021970 [Map]; Strand: w
      • AT4G38530.1 - [+] show detail - phospholipase C1
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT14974 - 3-prime edge
    ATTATGACTC CTCTCACTCT ATATTTTACC TGACAAGATC CGTTCCTCTG 
    GTCCTAACCA TAGTGTCTAG CCACTGCTCG TCCATGCTGA CCCGTATAGG
    CTTCTCTGGA TCATCACTCA AGCAATCCTT TGAAGGATCT TTGCAGTTTG
    CAGCGTGGAT TGCTATCAAG TCTCTATATC CTACAGCTTC GCTCTCCATA
    TCTTTATATT CTTCAAGAAT CTTGTTCGCT ACTCTGTTCC ACGAAGTCTC
    TTTAACCGGG GGAGTTCTTG TGGTGTGTAC AGGTTTGCTC TCAAGATACT
    CCTTTGGAGG CTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11517075 [Map]; Strand: c
      • AT4G21670.1 - [+] show detail - C-terminal domain phosphatase-like 1
        Distance: 0; Region: exon17 (3UTR)
    Flanking Genome Sequence: GT14974 - 5-prime edge
    CTTTCTCCCT GCGAGCTGAT GCTTCAACTC AAGAGTTTCT ATGATACAAA 
    AATCGCGAAC CGCCTCAAAT TGTTGTTACA TCAATACAAG AGAGGCAACT
    CTCGCTGTCT TGATCATCAT TTGGCGAAGA AAGGAACTTG ACAAAGAATT
    CGTCTTGGTA GCTGTTTTTA CCAAGAGAAT GGAATTAATG TAGAATGTGG
    TTCGTTCTTC ACATGGTTTT ATTTTTAAGA GTATCTTCCC GAAGATGGCA
    TCCGTTGCAG AGACCGTTGA AAGTCCGGCT TTAATCGCTT GTTTGACATC
    CCACCAAATG ATCTAAACAT CAACAAGAAA CCGGTTTTTA AAATATATCA
    ACTGACATTT TTATTTTGAT AATCATATAG ATATAGTCAA GAACAAACCG
    TGGAGATCCT TGTCGTTTAT GCAGAGGTTG ACCAAGCATT GATCTCACAC
    TGGACAGTGC TCTCTCAGCA GCCTAAAGGT AAGAACGTCA GAGAAGGGAA
    AAGATGGGAT CAGAATAAAC CCGAGGCAAG AATTTAGTTG AGTTACCTGC
    ATTCTAGCTT CGTCCCATG

AT4G21670.1

Model type
Protein coding
Short Description
C-terminal domain phosphatase-like 1
Curator Summary
encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl.
Computational Description
C-terminal domain phosphatase-like 1 (CPL1); FUNCTIONS IN: double-stranded RNA binding, phosphatase activity, nucleotide phosphatase activity; INVOLVED IN: abscisic acid mediated signaling pathway, negative regulation of transcription, response to abiotic stimulus; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: carboxyl-terminal domain (ctd) phosphatase-like 2 (TAIR:AT5G01270.2); Has 330 Blast hits to 317 proteins in 105 species: Archae - 0; Bacteria - 31; Metazoa - 57; Fungi - 81; Plants - 112; Viruses - 1; Other Eukaryotes - 48 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38530.1

Model type
Protein coding
Short Description
phospholipase C1
Curator Summary
Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.
Computational Description
phospholipase C1 (PLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phospholipase C1 (TAIR:AT5G58670.1); Has 2562 Blast hits to 1935 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1702; Fungi - 403; Plants - 251; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR