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GT14978

CSHL Arabidopsis genetrap mutant lines

Original: GT14978

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14978

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18022049 [Map]; Strand: c
      • AT4G38530.1 - [+] show detail - phospholipase C1
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT14978 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAA 
    TAATAAGATG AACCTGAGTC AGAGTTTGAA AAAAAACAAA AACAGGTTTA 
    CACAGAGGAA TCTGGTGAGG ATATATCCAA AGGGCACAAG AGTGGACTCG 
    TCAAACTACG ATCCTCATGT TGGGTGGACA CACGGTGCTC AAATGGTTGC 
    TTTTAACATG CAAGTAAGTG GAACTGGCTC ATCATCGTTT GACTTGTTAA 
    AAAATGGTTG AATAATATTT GTGTTGAAAA GGGACATGGG AAGCAACTAT 
    GGATAATGCA AGGAATGTTC AGGGGGAATG GTGGATGTGG GTACGTTAAA 
    AAGCCTCGCA TCTTGCTAGA CGAGCACACA CTCTTCGACC CTTGCAAAAG 
    GTTTCCCATT AAGACCACTC TTAAGGTTAA GATTTACACT GGCGAAGGAT 
    GGGATTTGGA TTTCCATCAT ACACACTTTG ATCAATACTC TCCTCCAGAT 
    TTCTTCGTCA AGGTAAACAA CAACTACTAC TCTTCTTTTA AACTAGATTT 
    CTTCGTAACT GTGTGTGTGT TGCATTTGCT G

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18021976 [Map]; Strand: c
      • AT4G38530.1 - [+] show detail - phospholipase C1
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT14978 - 5-prime edge 
    ACTCTTGAGT CGAAAAAGGT TCAACATTAT GACTCCTCTC ACTCTATATT 
    TTACCTGACA AGATCCGTTC CTCTGGTCCT AACCATAGTG TCTAGCCACT 
    GCTCGTCCAT GCTGACCCGT ATAGGCTTCT CTGGATCATC ACTCAAGCAA 
    TCCTTTGAAG GATCTTTGCA GTTTGCAGCG TGGATTGCTA TCAAGTCTCT 
    ATATCCTACA GCTTCACTCT CCATATCTTT ATATTCTTCA AGAATCTTGT 
    TCGCTACTCT GTTCCACGAA GTCTCTTTAA CCGTTGGAGT TCTTGTGGTG 
    TGTACAGTTT TGCTCTCAAG ATACTCCTTT GGAGGCTTCG TAGAGATCAG 
    GATCTTCCCC TTAAGTTCTT CTGGTGATGG AAAATGCTTA AAACTCTCTG 
    AGACACGACG AAACAGCATC CCTCTGTATG TTTTAGTTAA CATCTACAAA 
    CATAGAATCA ATCAAATTTG TAAATCACTC TTTTTCAGAG AACGAAATAT 
    ATACTCTGTT TCTGCAAAAC CAACTTACCT TAGCAACTTG CGCTTGAAGC 
    TTGGGTGGCA AATGATCTTC GAGAGTGATG ATGACTGGAT AGTCAGACAC 
    ATGAAACGCG TTATCCTTAA TGGCGGTTAG ACATTTCTGC AAATCTTCAT 
    GCGAAGTAAG CGTCCTGATG AGAGAACAAA ACACATATAG TGTGTGACAT 
    TTTTTGGAGT CTGTTTGTTG ATATAAGACT TCGTTAGTGG GACAACCTGC 
    CATGACGAAC TTCAGCAGCG TTCCCTGAAG GATTAGGCCA TAAGTCGAGC 
    T

AT4G38530.1

Model type
Protein coding
Short Description
phospholipase C1
Curator Summary
Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670.
Computational Description
phospholipase C1 (PLC1); FUNCTIONS IN: phospholipase C activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphoinositol-specific, EF-hand-like (InterPro:IPR015359), Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711); BEST Arabidopsis thaliana protein match is: phospholipase C1 (TAIR:AT5G58670.1); Has 2562 Blast hits to 1935 proteins in 260 species: Archae - 0; Bacteria - 0; Metazoa - 1702; Fungi - 403; Plants - 251; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR