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GT14997

CSHL Arabidopsis genetrap mutant lines

Original: GT14997

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14997

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17176188 [Map]; Strand: w
      • AT3G46616.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -2436; Region: intergenic
      • AT3G46620.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
        Distance: 2509; Region: intergenic
    Flanking Genome Sequence: GT14997 - 3-prime edge 
    AAATTCAAAT CGGGATCAAA GGGTTTTGAT TTTGGGTCGA TGATAATCAG 
    ATGATTAATG CAAGGATTAT TACTTGTCTA TTGGTTTGAA TCCGGATCGT 
    GTGATAGTCT TACGAAATCG AAGAAGGTAC GAAATGTTTC GATCTCTCTA 
    TCTTCTTGGT TAATTTGGGA ATCTAGGGTT TGGATTTGGA ATTTGCTTTC 
    GTTGATTTCT GTTGGAATTT AGAGGTTTGA TGGTTCTGGG ATCTTTCTAT 
    TAGGATAATG TCTATCTTGT TCGATAGGTT TTAAATTTGG TGATCGGAGA 
    CTTTTAATGT TCTGAAACAG TTGAATAGAG TCTACATCAA AATGTCTCTC 
    TTACTTGTTG AAATTGATGA GTCTGAATGG CTAAAAAAAC CAACGATTTA 
    AAAACCAACT TTTAGTCCAT GATTTTGATT GTATCGTTTT GGGATTTTAA 
    GGAAGCAAAA TCTGGACTAA TGGATCTTTC TTT

AT3G46616.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 0 Blast hits to 0 proteins in 0 species (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G46620.1

Model type
Protein coding
Short Description
zinc finger (C3HC4-type RING finger) family protein
Computational Description
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G59550.1); Has 8876 Blast hits to 8844 proteins in 271 species: Archae - 0; Bacteria - 6; Metazoa - 2388; Fungi - 760; Plants - 4652; Viruses - 43; Other Eukaryotes - 1027 (source: NCBI BLink).
Link
InterPro Scan - TAIR