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Mutant Lines
GT15027

GT15027

CSHL Arabidopsis genetrap mutant lines

Original: GT15027

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15027

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 23353932 [Map]; Strand: w
  - AT3G63210.1 - [+] show detail - Protein of unknown function (DUF581)
    Distance: 0; Region: exon2 (3UTR)
Flanking Genome Sequence: GT15027 - 3-prime edge
```
TGATTTTGTC ACAGCATCAT CTACTTTTGT ATTATTCTTT TAGTTCTCTG 
ATGCTT
```

3 prime edge [+] show sequence

Chromosome: 3; Position: 23354103 [Map]; Strand: w
- AT3G63210.1 - [+] show detail - Protein of unknown function (DUF581)
  Distance: 0; Region: intron1 (CDS)

GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTCACAA 
GTGTAGAGTG TGGTACGTGA CACAAAGAAT TTCGCACCAC CGAATGCATG 
TACCGAGAGA TGCTTCTTGC TCCCATAGAC AACTAAATCG CACTCCTTCT 
GCATCATCTT TCCACTACAA TTGATTTTGT CACAGCATCA TCTACTTTTG 
TATTATTCTT TTAGTTCTCT GATGCTTCTC CTCACTCGA

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 23722476 [Map]; Strand: c
  - AT5G58720.1 - [+] show detail - smr (Small MutS Related) domain-containing protein
    Distance: 0; Region: exon1 (CDS)
  - AT5G58720.2 - [+] show detail - smr (Small MutS Related) domain-containing protein
    Distance: 0; Region: exon1 (CDS)
  - AT5G58720.3 - [+] show detail - smr (Small MutS Related) domain-containing protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: GT15027 - 5-prime edge
```
TTATTGCTGC TACCGGGATG GGTTCTTCTG TGATTGCGAA GGATTACTTG 
CAGCCTAACC CTGTGTCAAA AGACTTTCCT ATCCATGGAA CGGTCTAAAG 
AGCTCTGTGG GAACGGGAAA AAAGCTGCGG ATAGAGAGAA AGCTGAACAG 
TTCTTAA
```

AT3G63210.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF581)
Curator Summary: encodes a novel zinc-finger protein with a proline-rich N-terminus, identical to senescence-associated protein SAG102
Computational Description: Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT3G22550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58720.1

Model type: Protein coding
Short Description: smr (Small MutS Related) domain-containing protein
Computational Description: smr (Small MutS Related) domain-containing protein; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58720.2

Model type: Protein coding
Short Description: smr (Small MutS Related) domain-containing protein
Computational Description: smr (Small MutS Related) domain-containing protein; FUNCTIONS IN: damaged DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58720.3

Model type: Protein coding
Short Description: smr (Small MutS Related) domain-containing protein
Computational Description: smr (Small MutS Related) domain-containing protein; FUNCTIONS IN: damaged DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR