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GT15029

CSHL Arabidopsis genetrap mutant lines

Original: GT15029

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15029

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30344880 [Map]; Strand: w
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: intron10 (CDS)
    Flanking Genome Sequence: GT15029 - 3-prime edge 
    CGTTACCGAC CGTTTTCATC CCTGCACCGC ACACTGTGTA GACAGTACCC 
    TGAAAAATCA TCAAACATTT AGTTAAGATT GTAAATAGCT TTATATTACA 
    AAGATCATAT AAAGCAAAGA TATTATCTTA CCGGAAGTGG TAAGAGATGA 
    GACTTAAACC CATCTATCAC GTACTCCTTC GGCTTCTCCT TGCAGTTGCT 
    GGAGAAATAT AAAGTAATTA TCAAAGAAAT TATCAAATAT AAAGCACAGA 
    AATTATCAAT ACAAAACTAG GTTAATATAG AAAAGTTACC CTAAGCCAGA 
    GTAAGGTTCC CATGTGTCAT AACTAGAATT GTATCCCTTC CACCTTACCT 
    GAGAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2374237 [Map]; Strand: c
      • AT4G04690.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15029 - 5-prime edge 
    CTCTGAGAGT CATTACTGGA AGGGTGCATG CCTCACAAAA CTTGTCTTTC 
    CGGCCAATGG TTTTCATCTC ACTCGACCAG ACCGGGCGTT ATCATAATAC 
    TTCATTGGAG ATCACAAAAA TATCTTGGCA TGGTGCGAGG GAGAAGTAGA 
    GGAAGATGAT AAATGGTATA CTTGCATCAC TCTTTACCAA ATTGATCAAT 
    GTGGGATCAG AAAGCAAATT GAGACAGGAC GACATAGATC GTTTCGCTAC 
    CTTGACCCGT TTATTTGTAG CTATGTTTAT GTTCCAAGTC TGATTCCGGT 
    TCCAGAATAA GAGTCTAGGG TTGTTTCTTG TTCATCTCAC TCGAC

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G04690.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G08750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR