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GT15039

CSHL Arabidopsis genetrap mutant lines

Original: GT15039

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15039

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 131828 [Map]; Strand: w
      • AT4G00305.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15039 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACTTGTGA 
    TAAACATGTA CGCAATTCCT CAAACACCGG ACTTCGTCAC CGCCGTCGAA 
    CTCATCTTGG CATATCCGGC AGCTCTCCGG CGGATTAACC CTTGATGATA 
    TATCCTCGAA CTTTGTTGCC GGAAGCATAT CGTCCATCGG AATCTTGTCG 
    GTGATAGTGC TCCCTGAAGA TGCCGAACCA AACAAACGAC GAATATCAAG 
    AAAAGAACGA ACTGATTTGA TAAAATCATT CAAGATAACT CCGGCGATAA 
    TAACTCCGGC GCCGCTATAA GATAAGCCCA TGATTCTTTT TCAAGAAAAG 
    AATGGTGAAG AAGAAATCTA AGAAGATAGG AATCTTTTTT ACGATCAAAT 
    TTGGAGAAAG AAAGAAGGAA AAGTTACGAG AGGATATAAA AATGGCTATT 
    TATATGATTT GTATATATTA GAATTAGGTT TTAGCGTGGA ACGCGAGGGC 
    GGGATTTAGA GAAGAAGATT GAAACGTACG TCAAAGAGAT AAAGATACTG 
    ACTGTGATGG AAAGAAACCA ATCATAGAAG AACATGTCAA TGGGAAAAAA 
    GTGTATGATT GGTTGGTGAC GGACAAGGAC AAATGAATAC AGAAAAGGGG 
    AAAAGAGATG TTCACATTGT TGAAAAACAT GCCTTTGAAG CCAAAGCATA 
    TGATATTCAA TTATTAAAAT AGAGATAGCT AATTGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 131461 [Map]; Strand: w
      • AT4G00305.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -89; Region: promoter
    Flanking Genome Sequence: GT15039 - 3-prime edge 
    GAATCTTTTT TACGATCAAA TTTGGAGAAA GAAAGAAGGA AAAGTTACGA 
    GAGGATATAA AAATGGCTAT TTATATGATT TGTATATATT AGAATTAGGT 
    TTTAGCGTGG AACGCGAGGG CGGGATTTAT AGAAGAAGAT TGAAACGTAC 
    GTCAAAAAGA TAAAGATACT GACTGTGATG GAAAGAAACC AATCTTAGAA 
    GAACATGTCA ATGGGAAAAA AGTGTATGAT TGGTTGGTGA CGGACAAGGA 
    CAATGAAATA CCGAAAAGGG GAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 131917 [Map]; Strand: w
      • AT4G00305.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15039 - 5-prime edge 
    TGACCGTTGG ATCCAAGACG ATAAGATGAC GTGTCCTTTG TGTAGGACCC 
    CGATCGTTCC TGATTTCTAT TTTTTTCGTT TGTAAATTAG AAAAGCTAAA 
    TGTTTCATTA ATCAGATTTT TTTTTCAGCA AATAGATATC AATCGTTCAC 
    TAATAAAAAC TAATCTTTTG CCTAGTTTAT TTATTTAGTT ACTTCCCATA 
    ATTCATCTCA CTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 132773 [Map]; Strand: w
      • AT4G00310.1 - [+] show detail - Putative membrane lipoprotein
        Distance: -870; Region: promoter
      • AT4G00310.2 - [+] show detail - Putative membrane lipoprotein
        Distance: -874; Region: promoter
    Flanking Genome Sequence: GT15039 - 5-prime edge 
    TACTCTCCAC GAGAACACCC ACGTGGCGGT TTCACTGATA AAATAACACA 
    TTTGGGGTAT CCACTCATAC CAAATACATG ACGTCTTTTC ACGCTTATCA 
    ATTATTTCCT AATGTAC

AT4G00305.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: brassinosteroid-responsive RING-H2 (TAIR:AT3G61460.1); Has 6452 Blast hits to 6437 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 1579; Fungi - 466; Plants - 3776; Viruses - 3; Other Eukaryotes - 628 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00310.1

Model type
Protein coding
Short Description
Putative membrane lipoprotein
Computational Description
EMBRYO SAC DEVELOPMENT ARREST 8 (EDA8); Has 49 Blast hits to 49 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00310.2

Model type
Protein coding
Short Description
Putative membrane lipoprotein
Computational Description
EMBRYO SAC DEVELOPMENT ARREST 8 (EDA8); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR